Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   OS088_RS06070 Genome accession   NZ_CP113051
Coordinates   1205815..1207494 (-) Length   559 a.a.
NCBI ID   WP_154284343.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Viktor     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1200815..1212494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS088_RS06050 - 1200965..1202239 (-) 1275 WP_209205911.1 dihydrolipoamide acetyltransferase family protein -
  OS088_RS06055 - 1202252..1203235 (-) 984 WP_154284342.1 alpha-ketoacid dehydrogenase subunit beta -
  OS088_RS06060 - 1203235..1204227 (-) 993 WP_000568355.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  OS088_RS06065 lpdA 1204243..1205664 (-) 1422 WP_001291533.1 dihydrolipoyl dehydrogenase -
  OS088_RS06070 recN 1205815..1207494 (-) 1680 WP_154284343.1 DNA repair protein RecN Machinery gene
  OS088_RS06075 ahrC 1207510..1207962 (-) 453 WP_001124985.1 transcriptional regulator AhrC/ArgR -
  OS088_RS06080 - 1208393..1209274 (-) 882 WP_000183376.1 polyprenyl synthetase family protein -
  OS088_RS06085 - 1209252..1209482 (-) 231 WP_000159865.1 exodeoxyribonuclease VII small subunit -
  OS088_RS06090 xseA 1209475..1210812 (-) 1338 WP_001286928.1 exodeoxyribonuclease VII large subunit -
  OS088_RS06095 nusB 1210829..1211218 (-) 390 WP_000087385.1 transcription antitermination factor NusB -
  OS088_RS06100 - 1211266..1211640 (-) 375 WP_267815006.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 64293.90 Da        Isoelectric Point: 4.7316

>NTDB_id=688539 OS088_RS06070 WP_154284343.1 1205815..1207494(-) (recN) [Staphylococcus aureus strain Viktor]
MLQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLIGMRASSDFVRHGEKKAVIEGIFDIDESKDAIHIL
KNMDIDVDEDFLLVKREIFSSGKSLCKINNQTVTLQDLRKVMQELLDIHGQHETQSLLKQKYHLTLLDNYAESRYQDLLD
KYHQTFQNYKAKKQELEDLESADQALLQRLDLMKFQLEELSEAHLKEGEIEQLEIDIKRIQNSEKLSLALNNAHMTLTDE
NAITDRLYELSNHLLTINDIVPNKYDKLKEDIDQFYYILEDAKHELYDEMVNTEFDEQVLNEYESRMNLLNNLKRKYGKD
ISELIAYQEKLNNEINKIENYEQSTSQLREEINALYNQVIEVGQALSKQRRIVARELRDHIVSEIQNLQMKDANLEISFK
KLEEPNIDGIEFVEFLISPNKGEPLKSLNKIASGGELSRIMLALKSIFVKSRGQTAILFDEVDSGVSGQAAQKMAEKMRD
IAEYIQVICISHLPQVASMSDHHLLISKSSKDDRTTTQVQELIGDDKVDEIARMISGASVTDLTRENAREMIQHNQRRR

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=688539 OS088_RS06070 WP_154284343.1 1205815..1207494(-) (recN) [Staphylococcus aureus strain Viktor]
ATGTTACAAACCTTATCAATCAAGCAATTTGCTATTATTGAAGAGTTAGAAATTCAATTTTCTGATGGTTTAACTGTTTT
AAGTGGTGAAACGGGTTCAGGTAAGTCAATTATTATAGATGCAATTGGACAATTAATTGGAATGAGAGCTTCATCTGATT
TTGTAAGACATGGTGAAAAAAAGGCTGTCATCGAAGGTATATTTGATATTGACGAGAGTAAAGATGCTATACATATATTG
AAAAATATGGATATTGATGTAGATGAAGATTTTTTATTAGTTAAACGGGAAATTTTCAGCTCTGGTAAAAGTCTTTGTAA
AATTAATAATCAAACAGTTACTTTACAAGATTTACGAAAAGTTATGCAAGAATTATTAGATATTCATGGCCAACATGAAA
CGCAGTCTTTGTTGAAACAAAAATACCATTTAACATTATTGGATAATTACGCAGAATCACGTTATCAAGATTTGTTGGAT
AAATATCATCAAACTTTTCAAAATTATAAAGCCAAAAAGCAAGAGTTAGAAGATTTAGAATCAGCAGACCAAGCATTGCT
GCAGCGTTTAGATTTAATGAAATTCCAATTAGAAGAATTGTCTGAAGCACATCTAAAAGAAGGCGAAATAGAGCAACTTG
AAATAGATATTAAACGCATTCAAAACTCTGAAAAATTAAGCTTAGCGCTTAATAACGCACATATGACATTAACGGATGAA
AATGCTATCACTGATCGTTTGTATGAACTAAGCAACCATTTGTTAACAATAAACGATATAGTTCCAAACAAATATGACAA
ATTAAAAGAAGATATTGATCAATTTTACTACATTTTAGAAGATGCAAAACATGAGTTATATGATGAAATGGTTAATACAG
AATTCGACGAACAAGTGTTAAACGAGTATGAATCTCGTATGAATTTGCTGAATAATTTAAAACGTAAATATGGAAAAGAT
ATTTCAGAATTAATCGCATATCAAGAAAAGCTTAATAATGAAATCAATAAAATTGAAAACTATGAACAAAGTACATCGCA
GTTACGAGAAGAAATAAATGCATTGTATAATCAAGTTATAGAGGTTGGACAAGCGTTATCAAAGCAGCGTCGTATAGTCG
CTAGGGAGTTAAGAGACCACATTGTATCGGAAATTCAAAACTTACAAATGAAAGACGCAAATCTTGAGATTTCATTTAAA
AAATTAGAAGAACCGAATATTGATGGAATCGAATTTGTAGAATTTTTAATCAGTCCAAATAAAGGGGAACCATTAAAAAG
TTTAAATAAAATTGCATCAGGTGGAGAACTTTCTAGAATTATGTTAGCGTTAAAAAGTATTTTTGTTAAATCGAGAGGTC
AAACTGCAATTTTATTCGATGAGGTTGACTCAGGTGTATCTGGACAAGCCGCACAAAAAATGGCAGAGAAAATGCGAGAT
ATAGCAGAATATATACAAGTTATTTGTATTTCTCACTTGCCACAAGTTGCATCGATGAGCGACCATCATTTATTAATTTC
GAAGTCATCAAAAGATGATCGTACAACAACACAAGTTCAAGAGTTAATTGGCGATGATAAAGTAGATGAAATTGCACGAA
TGATTTCAGGTGCAAGTGTTACTGATTTAACTCGAGAAAATGCAAGAGAAATGATACAACACAATCAAAGACGTAGATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.234

100

0.44