Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   OS088_RS05580 Genome accession   NZ_CP113051
Coordinates   1116204..1116830 (+) Length   208 a.a.
NCBI ID   WP_001108889.1    Uniprot ID   Q7B2U9
Organism   Staphylococcus aureus strain Viktor     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1111204..1121830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS088_RS05550 - 1112189..1112521 (-) 333 WP_000516800.1 DUF4889 domain-containing protein -
  OS088_RS05555 - 1112605..1113750 (-) 1146 WP_000487150.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  OS088_RS05565 gpsB 1114401..1114745 (-) 345 WP_001286320.1 cell division regulator GpsB -
  OS088_RS05570 - 1114759..1115322 (-) 564 WP_209205731.1 DUF1273 domain-containing protein -
  OS088_RS05575 - 1115315..1115665 (-) 351 WP_154283977.1 YppE family protein -
  OS088_RS05580 recU 1116204..1116830 (+) 627 WP_001108889.1 Holliday junction resolvase RecU Machinery gene
  OS088_RS05585 - 1116827..1119010 (+) 2184 WP_267814945.1 transglycosylase domain-containing protein -
  OS088_RS05590 - 1119528..1119869 (-) 342 WP_000182028.1 YpoC family protein -
  OS088_RS05595 nth 1119874..1120533 (-) 660 WP_000253765.1 endonuclease III -
  OS088_RS05600 - 1120523..1121209 (-) 687 WP_000362213.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24443.81 Da        Isoelectric Point: 9.7084

>NTDB_id=688536 OS088_RS05580 WP_001108889.1 1116204..1116830(+) (recU) [Staphylococcus aureus strain Viktor]
MNYPNGKPYRKNSAIDGGKKTAAFSNIEYGGRGMSLEKDIEHSNTFYLKSDIAVIHKKPTPVQIVNVNYPKRSKAVINEA
YFRTPSTTDYNGVYQGYYIDFEAKETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFEVFWK
RYKDNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRV

Nucleotide


Download         Length: 627 bp        

>NTDB_id=688536 OS088_RS05580 WP_001108889.1 1116204..1116830(+) (recU) [Staphylococcus aureus strain Viktor]
ATGAATTATCCAAATGGTAAACCATATCGTAAAAATAGTGCTATAGACGGAGGGAAAAAGACCGCTGCCTTTAGTAATAT
TGAGTATGGTGGACGTGGTATGTCACTTGAAAAAGATATCGAACATTCAAATACGTTTTATCTTAAAAGCGACATTGCAG
TTATTCACAAAAAGCCTACGCCAGTACAAATAGTTAATGTCAACTATCCTAAGCGGAGTAAAGCTGTGATTAACGAAGCT
TATTTTCGTACACCTTCAACAACTGATTACAACGGCGTTTATCAAGGTTATTATATTGATTTTGAAGCAAAGGAAACTAA
AAACAAGACGTCCTTTCCTTTAAATAATATTCATGACCATCAAGTCGAACATATGAAAAATGCATATCAACAAAAAGGTA
TTGTGTTTTTAATGATTCGTTTTAAAACGCTAGATGAAGTTTATCTTTTACCCTATTCAAAATTCGAAGTATTTTGGAAG
AGATATAAAGATAATATTAAAAAGTCTATAACAGTTGATGAAATACGAAAAAATGGTTACCATATTCCTTATCAGTATCA
ACCAAGATTAGACTATCTAAAAGCAGTTGATAAGTTGATATTAGATGAAAGTGAGGACCGCGTATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7B2U9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

53.14

99.519

0.529