Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   OS088_RS04005 Genome accession   NZ_CP113051
Coordinates   794480..795190 (-) Length   236 a.a.
NCBI ID   WP_000094091.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Viktor     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 789480..800190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS088_RS03970 - 790191..790523 (+) 333 WP_000531320.1 putative DNA-binding protein -
  OS088_RS03975 ffh 790549..791916 (+) 1368 WP_267814742.1 signal recognition particle protein -
  OS088_RS03980 - 792130..793521 (-) 1392 WP_031788255.1 recombinase family protein -
  OS088_RS14495 - 793579..793716 (-) 138 WP_225370885.1 hypothetical protein -
  OS088_RS14500 - 793843..794084 (-) 242 Protein_774 hypothetical protein -
  OS088_RS03995 - 794140..794325 (-) 186 WP_024936996.1 hypothetical protein -
  OS088_RS04000 - 794322..794468 (-) 147 WP_001049401.1 hypothetical protein -
  OS088_RS04005 irvR 794480..795190 (-) 711 WP_000094091.1 helix-turn-helix domain-containing protein Regulator
  OS088_RS04010 - 795361..795600 (+) 240 WP_000548576.1 helix-turn-helix transcriptional regulator -
  OS088_RS04015 - 795613..796056 (+) 444 WP_000435355.1 hypothetical protein -
  OS088_RS04020 - 796071..796214 (+) 144 WP_000939498.1 hypothetical protein -
  OS088_RS04025 - 796204..796413 (-) 210 WP_000642492.1 hypothetical protein -
  OS088_RS04030 - 796470..797183 (+) 714 WP_031912126.1 BRO family protein -
  OS088_RS04035 - 797285..797446 (+) 162 WP_000066019.1 DUF1270 family protein -
  OS088_RS04040 - 797538..797798 (+) 261 WP_031890781.1 DUF1108 family protein -
  OS088_RS04045 - 797813..798292 (+) 480 WP_000002517.1 siphovirus Gp157 family protein -
  OS088_RS04050 - 798292..798930 (+) 639 WP_001043063.1 ERF family protein -
  OS088_RS04055 ssb 798930..799358 (+) 429 WP_000934783.1 single-stranded DNA-binding protein -
  OS088_RS04060 - 799372..800055 (+) 684 WP_267814762.1 putative HNHc nuclease -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26884.44 Da        Isoelectric Point: 5.1973

>NTDB_id=688523 OS088_RS04005 WP_000094091.1 794480..795190(-) (irvR) [Staphylococcus aureus strain Viktor]
MSSFSSNLERLMNKRDMSDSELAELVDVNRTTVTRWRKGIRSPKLDKLPEIANVFGVKPLDLIHDMDDSKIIEEIHNVSS
QLTPPRQSNVLKYATNQLEEQNNDSDDNLVDFNSYIQEKSEVDIYGCASAGIGERLYNEPISKEFVRGYVPAHDIALKVN
GDSMEPLFKNGQIIFIEKSHTIKDGQIGVFIINGDAYVKKVYVEDNRLTLVSLNKKYKDLHFYDNESVRLVGKVIL

Nucleotide


Download         Length: 711 bp        

>NTDB_id=688523 OS088_RS04005 WP_000094091.1 794480..795190(-) (irvR) [Staphylococcus aureus strain Viktor]
ATGAGTTCATTTTCTTCGAATCTAGAACGTCTGATGAACAAAAGAGATATGAGTGATAGTGAATTAGCAGAATTAGTAGA
TGTAAATAGAACAACAGTCACAAGATGGAGAAAGGGAATTAGAAGTCCAAAACTAGATAAATTACCTGAAATAGCTAACG
TTTTTGGAGTTAAACCCTTAGATTTAATACATGATATGGATGATTCGAAAATTATTGAAGAAATTCATAACGTGTCATCT
CAACTCACGCCTCCAAGACAAAGCAATGTACTAAAATATGCGACTAATCAATTAGAAGAGCAAAATAATGACAGTGATGA
TAATCTGGTAGATTTCAATTCTTACATTCAAGAAAAATCCGAAGTGGATATATATGGTTGTGCGTCTGCTGGTATTGGTG
AAAGATTATATAACGAACCTATTTCAAAAGAATTCGTAAGAGGTTATGTCCCCGCACATGATATAGCTTTAAAAGTAAAT
GGAGACTCAATGGAGCCGTTATTTAAAAATGGACAAATTATATTCATTGAAAAATCTCACACTATCAAAGATGGACAAAT
AGGCGTCTTTATTATAAATGGAGATGCTTACGTAAAGAAGGTTTATGTAGAAGATAACAGATTAACGTTGGTTTCTTTAA
ATAAAAAGTATAAAGATTTACATTTTTATGATAATGAAAGTGTGAGGTTAGTTGGAAAAGTTATTTTATAG

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(124-235)

Helix-turn-helix (HTH_3)

(8-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

30.769

100

0.373