Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   OS089_RS05865 Genome accession   NZ_CP113049
Coordinates   1167296..1168378 (-) Length   360 a.a.
NCBI ID   WP_000370986.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Ahri     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1162296..1173378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS089_RS05845 - 1162911..1163009 (-) 99 WP_031844945.1 hypothetical protein -
  OS089_RS05850 secA 1163051..1165582 (-) 2532 WP_000506541.1 preprotein translocase subunit SecA -
  OS089_RS05855 hpf 1165996..1166568 (-) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  OS089_RS05860 - 1166629..1167303 (-) 675 WP_001057968.1 ComF family protein -
  OS089_RS05865 comFA 1167296..1168378 (-) 1083 WP_000370986.1 DEAD/DEAH box helicase Machinery gene
  OS089_RS05870 fakB1 1168742..1169608 (-) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  OS089_RS05875 - 1169752..1170393 (+) 642 WP_000192947.1 YigZ family protein -
  OS089_RS05880 - 1170565..1171620 (-) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  OS089_RS05885 gdpS 1171938..1173008 (+) 1071 WP_000460983.1 GGDEF domain-containing protein GdpS -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42055.60 Da        Isoelectric Point: 9.8309

>NTDB_id=688458 OS089_RS05865 WP_000370986.1 1167296..1168378(-) (comFA) [Staphylococcus aureus strain Ahri]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKHAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINKQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=688458 OS089_RS05865 WP_000370986.1 1167296..1168378(-) (comFA) [Staphylococcus aureus strain Ahri]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGCTCGCAAAGTTCATCGCAAGCATATTATCATCTCTCATTTGAATT
GTCAGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAACACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTTTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAAACAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(214-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367