Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   M4I31_RS14910 Genome accession   NZ_CP097324
Coordinates   3106395..3107009 (-) Length   204 a.a.
NCBI ID   WP_085048595.1    Uniprot ID   -
Organism   Citrobacter sp. XT1-2-2 strain XT1_2_2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3101395..3112009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4I31_RS14895 (M4I31_14895) helD 3101619..3103673 (-) 2055 WP_250856807.1 DNA helicase IV -
  M4I31_RS14900 (M4I31_14900) - 3103799..3104245 (+) 447 WP_085048594.1 YccF domain-containing protein -
  M4I31_RS14905 (M4I31_14905) yccS 3104264..3106426 (+) 2163 WP_085048614.1 YccS family putative transporter -
  M4I31_RS14910 (M4I31_14910) sxy/tfoX 3106395..3107009 (-) 615 WP_085048595.1 TfoX/Sxy family DNA transformation protein Regulator
  M4I31_RS14915 (M4I31_14915) sulA 3107226..3107735 (+) 510 WP_038639432.1 SOS-induced cell division inhibitor SulA -
  M4I31_RS14920 (M4I31_14920) ompA 3108093..3109139 (+) 1047 WP_085048596.1 porin OmpA -
  M4I31_RS14925 (M4I31_14925) matP 3109238..3109690 (-) 453 WP_042314187.1 macrodomain Ter protein MatP -
  M4I31_RS14930 (M4I31_14930) - 3109876..3111636 (+) 1761 WP_085048597.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23131.64 Da        Isoelectric Point: 9.3867

>NTDB_id=688418 M4I31_RS14910 WP_085048595.1 3106395..3107009(-) (sxy/tfoX) [Citrobacter sp. XT1-2-2 strain XT1_2_2]
MKELSYAKIYKSQEYLASLGTIHYRSLFGSYSLTVGDTVFAMVASGELYLRACEQSVQYCAKNSPVWLTFIKRGRPVVLN
YYQVNDALWQNHQQLVSLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRTLGAQMCWLKLRQNN
PALTVKILYALEGAVGGVHEAALPAVRRQELVEWVSSLTPKPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=688418 M4I31_RS14910 WP_085048595.1 3106395..3107009(-) (sxy/tfoX) [Citrobacter sp. XT1-2-2 strain XT1_2_2]
ATGAAAGAACTTTCTTATGCAAAGATCTATAAATCACAAGAATATCTGGCGTCTCTGGGAACAATTCACTATCGCTCATT
ATTTGGCAGCTACAGTTTGACGGTTGGGGATACGGTCTTTGCTATGGTCGCCAGCGGTGAGTTATATCTTCGGGCCTGCG
AACAGAGCGTACAGTACTGTGCAAAAAATTCGCCTGTCTGGCTGACATTTATAAAGCGCGGGCGTCCGGTGGTACTCAAC
TACTATCAGGTAAATGATGCGCTGTGGCAAAACCATCAGCAATTGGTGTCGTTATCGCGGTACTCATTGGATGCTGCTGT
TAAGGAAAAACAGAGTCGCTTTGCTCAACATCGTCTGCGGGAACTACCAAATATGACGTTTCATCTGGAGACCCTGCTAA
ATGAAGCAGGAATTAAAGATGAGGGAACATTGCGAACGTTGGGCGCCCAAATGTGCTGGCTGAAACTGCGGCAAAATAAT
CCAGCCCTGACGGTAAAAATACTTTATGCCCTTGAAGGCGCGGTCGGTGGCGTGCATGAAGCAGCGCTCCCGGCGGTCCG
TCGCCAGGAGCTGGTGGAGTGGGTCAGTTCACTGACGCCGAAGCCAGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.137

100

0.681