Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   OS089_RS00130 Genome accession   NZ_CP113049
Coordinates   20376..21089 (-) Length   237 a.a.
NCBI ID   WP_001031454.1    Uniprot ID   A0A0H2XG68
Organism   Staphylococcus aureus strain Ahri     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 15376..26089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS089_RS00095 - 16394..16732 (+) 339 Protein_18 SH3 domain-containing protein -
  OS089_RS00100 - 16827..16979 (-) 153 Protein_19 chemotaxis protein -
  OS089_RS00105 - 17035..18072 (-) 1038 WP_000857191.1 tyrosine-type recombinase/integrase -
  OS089_RS00110 - 18131..18595 (-) 465 WP_000825947.1 hypothetical protein -
  OS089_RS00115 - 18695..18877 (-) 183 WP_000705248.1 hypothetical protein -
  OS089_RS00120 - 19081..19422 (-) 342 Protein_23 hypothetical protein -
  OS089_RS00125 - 19428..20360 (-) 933 WP_000759682.1 exonuclease domain-containing protein -
  OS089_RS00130 irvR 20376..21089 (-) 714 WP_001031454.1 XRE family transcriptional regulator Regulator
  OS089_RS00135 - 21052..21225 (+) 174 WP_001801500.1 hypothetical protein -
  OS089_RS00140 - 21222..21485 (+) 264 WP_000854072.1 helix-turn-helix transcriptional regulator -
  OS089_RS00145 - 21501..21716 (+) 216 WP_001025404.1 Thoeris anti-defense Tad2 family protein -
  OS089_RS00150 - 21705..22034 (-) 330 WP_000128907.1 hypothetical protein -
  OS089_RS00155 - 22085..22837 (+) 753 WP_001148606.1 phage antirepressor KilAC domain-containing protein -
  OS089_RS00160 - 22854..23048 (+) 195 WP_000388066.1 hypothetical protein -
  OS089_RS00165 - 23079..23178 (+) 100 Protein_32 hypothetical protein -
  OS089_RS00170 - 23327..23647 (+) 321 WP_001120935.1 DUF771 domain-containing protein -
  OS089_RS00175 - 23644..23805 (+) 162 WP_000066025.1 DUF1270 domain-containing protein -
  OS089_RS00180 - 23898..24200 (+) 303 WP_071665634.1 DUF2482 family protein -
  OS089_RS00185 - 24205..24465 (+) 261 WP_000291510.1 DUF1108 family protein -
  OS089_RS00190 - 24474..24737 (+) 264 WP_071665633.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27017.58 Da        Isoelectric Point: 5.0545

>NTDB_id=688403 OS089_RS00130 WP_001031454.1 20376..21089(-) (irvR) [Staphylococcus aureus strain Ahri]
MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSNPSHGVIQRIADVFEVGKSDIDTTYKDDNDITSI
YNKLTPPRQENVLNYANEQLEEQNSKGDNVVDINSYKQEKTPVNVNGCVSAGVGERLHDETLFTEMVKGPIPTHDLALKV
NGDSMEPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKDYDDLHFYRNESVRLIGKVIL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=688403 OS089_RS00130 WP_001031454.1 20376..21089(-) (irvR) [Staphylococcus aureus strain Ahri]
ATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACT
TGCTGAACTCATTAACATAAAACCATCTACTTTAAGCGATTATTTAAATTTACGTTCCAACCCCTCTCACGGCGTTATAC
AAAGGATAGCTGATGTTTTCGAGGTTGGTAAAAGCGACATAGATACTACATACAAAGACGATAACGACATCACTTCCATA
TACAACAAACTCACACCTCCCCGCCAAGAAAACGTACTTAACTATGCAAATGAACAATTGGAAGAACAGAATTCTAAAGG
AGATAACGTTGTAGATATTAATTCATATAAACAGGAGAAAACTCCAGTTAACGTCAATGGTTGCGTCTCTGCTGGTGTAG
GAGAACGTTTACACGATGAAACGCTATTTACTGAAATGGTTAAAGGACCTATCCCCACACACGATTTAGCGTTAAAAGTA
AATGGTGATTCTATGGAACCTATGTTTAAAGATGGCGAAATCATATTTGTGGAGAAAACTCACAATATAAAGAATGGACA
AATTGGTATATTCATCATTGAAGAAGAAGCGTACGTTAAGAAAGTCTTTGTTGAAGATGATAGATTGACTCTAGTTTCAC
TAAATAAAGATTACGACGATCTACACTTTTATAGAAATGAAAGTGTGAGGTTAATTGGAAAAGTTATTTTATAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(127-236)

Helix-turn-helix (HTH_3)

(13-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2XG68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

33.929

100

0.401