Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   M2M59_RS07065 Genome accession   NZ_CP097314
Coordinates   1402598..1404298 (+) Length   566 a.a.
NCBI ID   WP_249775848.1    Uniprot ID   -
Organism   Rummeliibacillus sp. G93     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1397598..1409298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2M59_RS07040 (M2M59_07040) - 1397861..1398103 (+) 243 WP_147193612.1 exodeoxyribonuclease VII small subunit -
  M2M59_RS07045 (M2M59_07045) - 1398100..1398984 (+) 885 WP_147193611.1 polyprenyl synthetase family protein -
  M2M59_RS07050 (M2M59_07050) dxs 1399302..1401212 (+) 1911 WP_147193610.1 1-deoxy-D-xylulose-5-phosphate synthase -
  M2M59_RS07055 (M2M59_07055) - 1401209..1402030 (+) 822 WP_249775847.1 TlyA family RNA methyltransferase -
  M2M59_RS07060 (M2M59_07060) ahrC 1402128..1402577 (+) 450 WP_066786684.1 transcriptional regulator AhrC/ArgR -
  M2M59_RS07065 (M2M59_07065) recN 1402598..1404298 (+) 1701 WP_249775848.1 DNA repair protein RecN Machinery gene
  M2M59_RS07070 (M2M59_07070) - 1404419..1405378 (+) 960 WP_249775849.1 SpoIVB peptidase S55 domain-containing protein -
  M2M59_RS07075 (M2M59_07075) spo0A 1405667..1406458 (+) 792 WP_066786694.1 sporulation transcription factor Spo0A -
  M2M59_RS07080 (M2M59_07080) - 1407348..1408526 (-) 1179 WP_249775850.1 FtsW/RodA/SpoVE family cell cycle protein -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 63514.10 Da        Isoelectric Point: 4.7342

>NTDB_id=688365 M2M59_RS07065 WP_249775848.1 1402598..1404298(+) (recN) [Rummeliibacillus sp. G93]
MLKELSIKNFAIIEDLTVDFQEGLTVLTGETGAGKSIIIDAVQLLAGGRGSQEFIRHGAKKAELEGLFTLSSSMHTAYSK
CAEAGIDIEEGSVILRRDLNDNGKSVCRVNGKLVPLSLLREIGATLIDIHGQHESQELMDDKHHLSLLDQFAGDQITDQK
TLYISQYEEYRLLKKELAAISVNEQQVAQKIDLFQFQIKEIDACKFVPNEEDELMEERRRLLNFNKIFEGASTAHETILG
ESKGLDWIGQAMSALEDVATVDESFNEYSEAVSNAFYNLQEAAFGVKNILDELEFDPERLNEVEQRLALIGSMKRKYGHT
LEEILTYREKIGEELASLLNRDENIQKKEQQLMTLQKTLQKTAEKLTSIRKIVGEQLSFSIMQQLRELYMEKAEFSVHFE
TLAPGQFDQYGVDRVVFYIATNIGEPPKPLTKIASGGELSRVMLALKTIFSSSNGITSIIFDEVDTGVSGRVAQAIAEKI
AAVSIHSQVLCISHLPQVAAMADHHYYIQKQEDAHRTFTSLTEIFDDDRIGEISRIMSGAEVTDLTFQHAKELIDIANER
KKTMHA

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=688365 M2M59_RS07065 WP_249775848.1 1402598..1404298(+) (recN) [Rummeliibacillus sp. G93]
TTGTTAAAAGAACTGTCAATTAAAAATTTCGCTATTATTGAAGATCTGACGGTCGACTTTCAAGAAGGATTAACGGTCTT
GACTGGAGAAACTGGGGCAGGGAAGTCTATTATTATCGATGCCGTGCAACTTCTTGCAGGAGGGCGAGGATCTCAAGAAT
TTATTCGCCATGGGGCGAAAAAAGCCGAATTAGAAGGACTTTTTACCCTATCTTCATCGATGCATACAGCATATTCTAAA
TGTGCGGAAGCTGGCATTGATATAGAAGAAGGCTCGGTCATCCTTAGACGAGACTTAAATGATAACGGGAAAAGTGTTTG
CCGAGTCAACGGAAAACTTGTCCCACTATCATTACTTAGGGAAATAGGTGCAACATTAATCGACATTCACGGCCAGCACG
AAAGCCAAGAATTAATGGATGATAAGCATCACCTTTCGTTGCTTGATCAATTCGCAGGAGATCAAATCACAGATCAAAAA
ACGCTGTATATTTCGCAATACGAAGAATATCGCCTGTTGAAAAAGGAGCTTGCTGCGATTTCAGTTAATGAGCAACAAGT
GGCACAAAAAATTGATCTCTTTCAGTTTCAAATCAAAGAAATTGATGCATGCAAATTTGTGCCTAATGAAGAAGATGAAT
TAATGGAAGAACGCAGAAGACTGCTAAATTTCAACAAAATATTTGAAGGCGCAAGTACAGCGCACGAAACCATTTTAGGT
GAATCAAAAGGGCTTGATTGGATTGGTCAAGCTATGTCCGCATTAGAGGATGTGGCTACTGTTGACGAAAGCTTTAATGA
GTATTCAGAAGCTGTATCGAACGCATTTTACAATTTGCAAGAAGCTGCATTTGGAGTGAAAAATATTCTGGATGAGCTTG
AATTTGATCCAGAGAGGCTGAATGAAGTAGAGCAACGTTTAGCTCTTATTGGATCAATGAAGCGTAAATATGGGCATACT
TTAGAAGAAATTCTAACGTATCGTGAAAAAATAGGCGAGGAATTGGCATCTCTCTTAAACAGAGATGAAAATATCCAAAA
AAAAGAACAGCAATTAATGACATTGCAAAAAACATTGCAAAAAACCGCCGAAAAACTAACAAGTATTCGCAAAATTGTAG
GGGAACAGTTGTCTTTTTCCATTATGCAGCAGTTACGTGAATTGTATATGGAAAAAGCCGAATTTAGTGTTCATTTTGAA
ACATTGGCTCCTGGTCAGTTTGATCAATATGGAGTTGACCGTGTTGTCTTTTATATTGCGACAAATATAGGAGAACCGCC
TAAACCATTGACGAAAATCGCGTCTGGCGGGGAACTTTCACGTGTCATGCTAGCGCTTAAAACGATTTTTTCTTCATCTA
ATGGTATTACTTCCATTATATTTGATGAAGTCGATACTGGCGTTAGCGGACGAGTTGCTCAAGCTATTGCTGAAAAAATT
GCAGCGGTTTCAATACATTCACAGGTTTTATGTATTTCTCATTTGCCTCAAGTTGCCGCAATGGCTGATCATCATTATTA
TATCCAAAAGCAAGAAGATGCACACAGAACATTTACGTCTTTGACTGAGATTTTTGATGATGATCGGATTGGTGAAATTA
GCAGAATTATGTCTGGCGCAGAAGTAACAGATCTGACTTTCCAACATGCTAAAGAATTGATCGACATTGCAAATGAAAGA
AAGAAAACAATGCATGCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.778

100

0.537