Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   M2M59_RS03550 Genome accession   NZ_CP097314
Coordinates   748957..750771 (+) Length   604 a.a.
NCBI ID   WP_147194561.1    Uniprot ID   -
Organism   Rummeliibacillus sp. G93     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 743957..755771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2M59_RS03530 (M2M59_03530) trpS 744445..745434 (-) 990 WP_147194570.1 tryptophan--tRNA ligase -
  M2M59_RS03535 (M2M59_03535) spxA 746214..746609 (+) 396 WP_066791827.1 transcriptional regulator SpxA -
  M2M59_RS03540 (M2M59_03540) mecA 747024..747683 (+) 660 WP_147194567.1 adaptor protein MecA -
  M2M59_RS03545 (M2M59_03545) - 747781..748896 (+) 1116 WP_249775538.1 competence protein CoiA -
  M2M59_RS03550 (M2M59_03550) pepF 748957..750771 (+) 1815 WP_147194561.1 oligoendopeptidase F Regulator
  M2M59_RS03555 (M2M59_03555) - 751229..752041 (-) 813 WP_147194558.1 DsbA family protein -
  M2M59_RS03560 (M2M59_03560) - 752038..752439 (-) 402 WP_249775539.1 globin -
  M2M59_RS03565 (M2M59_03565) - 752631..753425 (-) 795 WP_249775540.1 lytic transglycosylase domain-containing protein -
  M2M59_RS03570 (M2M59_03570) - 753500..754078 (-) 579 WP_147194555.1 CYTH domain-containing protein -
  M2M59_RS03575 (M2M59_03575) - 754292..754678 (+) 387 WP_147194553.1 hypothetical protein -
  M2M59_RS03580 (M2M59_03580) - 754699..755379 (+) 681 WP_066784810.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69658.31 Da        Isoelectric Point: 4.7270

>NTDB_id=688359 M2M59_RS03550 WP_147194561.1 748957..750771(+) (pepF) [Rummeliibacillus sp. G93]
MTEKTKVLTREEVPEELTWKLEDIFQSNADWETSYQELAELAKQASQYQGTIAEGSDALLKVLRFRDEVYTKLGKLYAYS
HMRNDQDTTNSTYQAMDSRAKTLYAKVSTSLSFLTPEILALDEAVIKEYLKENKDLQLYTHELEEINNERPHILPAEQEA
LLSQMSEVTGASSNTFSMLNNADLEFPTVRDEEGNEVQLTHGNYVHFLESKDRSVREAAFRAMYKTYGDFKNTFAATLSG
NVKAHNVNAEIRHYDSARQAAMSANHIPEKVYDQLLETIHKYLPLMHRYIALRKKMLQVDELHMWDVYTPLVAESKIDMT
YDEAKEHMLKSLSVMGDEYVGIVEQALKDRWVDVLESKGKRSGAYSSGSYGTNPYILMNWQNNLDNLFTLVHEFGHSVHS
YFTRNNQPFVYGDYSIFVAEVASTCNEELLNDYLLKTIDDPKTRIYILNHWLEGFRGTIIRQTMFAEFEHIIHQMDQKGE
ALTADRMTEVYYELNKKYFGDDMVVDEEIGLEWARIPHFYYNYYVYQYATGKSAAIALSSQILSEGKPAVERYINEFLKA
GCSDYPINVLKAAGVDMESASPIEEACKVFERNLEELEKLLSEQ

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=688359 M2M59_RS03550 WP_147194561.1 748957..750771(+) (pepF) [Rummeliibacillus sp. G93]
ATGACAGAAAAAACGAAAGTACTTACAAGAGAAGAAGTACCAGAGGAATTAACATGGAAATTGGAAGATATTTTTCAGTC
AAATGCTGATTGGGAAACTTCTTATCAAGAATTAGCAGAATTGGCGAAACAGGCTTCGCAATATCAAGGTACTATTGCTG
AAGGATCGGATGCATTGCTTAAAGTCCTTCGTTTCCGCGATGAAGTTTATACTAAGCTTGGAAAGCTTTATGCATATTCT
CATATGCGCAATGACCAAGATACAACGAATTCCACATACCAAGCTATGGACAGTCGCGCTAAAACATTATATGCAAAGGT
TTCTACAAGCCTGTCTTTCTTGACGCCGGAAATTTTAGCGTTGGATGAAGCGGTAATTAAAGAATATTTGAAAGAAAATA
AGGATCTCCAATTATATACACATGAATTAGAAGAAATTAATAATGAACGCCCTCATATTTTGCCTGCAGAGCAAGAGGCA
TTGCTTTCGCAAATGTCTGAGGTAACGGGTGCTTCTTCTAATACCTTTAGCATGCTGAACAATGCAGACCTGGAATTCCC
AACTGTACGTGATGAAGAAGGTAATGAAGTTCAATTAACTCATGGCAACTATGTTCATTTCTTGGAAAGCAAAGATCGCT
CAGTCCGTGAGGCTGCATTCCGTGCGATGTACAAAACGTATGGAGATTTTAAAAATACATTTGCCGCAACGTTATCAGGC
AATGTGAAAGCTCATAATGTGAATGCTGAAATTCGCCATTATGATTCTGCCCGCCAAGCTGCTATGAGCGCAAATCATAT
TCCAGAAAAAGTATACGATCAATTGCTTGAAACTATCCACAAGTATTTACCGTTGATGCACCGCTACATTGCATTGCGCA
AAAAAATGCTTCAAGTAGATGAATTGCATATGTGGGATGTCTATACACCACTTGTCGCTGAATCAAAAATTGATATGACA
TATGACGAAGCCAAGGAACATATGCTCAAATCCTTAAGTGTGATGGGTGATGAGTATGTAGGTATCGTTGAGCAAGCTTT
AAAAGATCGCTGGGTGGATGTTTTAGAAAGCAAAGGCAAACGCAGCGGGGCTTATTCATCAGGTTCTTACGGAACAAATC
CATACATTCTGATGAACTGGCAAAACAATCTGGATAACTTGTTCACACTTGTGCATGAATTTGGACATAGTGTCCACAGT
TATTTCACACGCAACAATCAACCGTTCGTGTACGGTGATTATTCAATTTTTGTGGCAGAGGTAGCATCCACATGTAATGA
AGAATTGTTAAATGACTACCTGCTGAAAACAATTGATGATCCGAAAACAAGAATTTATATCTTAAACCATTGGCTTGAAG
GCTTCCGTGGCACCATTATTCGTCAAACAATGTTCGCAGAATTTGAGCATATTATTCATCAAATGGACCAAAAAGGTGAA
GCTCTAACTGCTGATCGTATGACTGAAGTATACTATGAGTTAAATAAGAAATATTTTGGTGACGACATGGTCGTAGATGA
AGAGATCGGCTTGGAATGGGCTCGCATTCCACACTTCTACTACAACTATTATGTGTATCAATATGCAACAGGTAAAAGTG
CTGCAATTGCATTAAGTTCTCAAATTTTATCAGAGGGCAAACCAGCTGTAGAGCGCTATATCAATGAGTTCCTAAAAGCA
GGCTGCTCAGATTATCCTATCAATGTGTTAAAAGCTGCTGGTGTTGATATGGAATCTGCATCCCCAATTGAAGAAGCATG
TAAAGTGTTCGAGCGAAACTTAGAAGAATTAGAAAAGCTTTTGTCAGAACAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(208-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.155

98.013

0.482