Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   M4S28_RS16405 Genome accession   NZ_CP097293
Coordinates   3619461..3620465 (+) Length   334 a.a.
NCBI ID   WP_004729690.1    Uniprot ID   A0A7W4CDV7
Organism   Vibrio sp. J383     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3614461..3625465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4S28_RS16390 (M4S28_16390) - 3614847..3616136 (-) 1290 WP_102457994.1 malic enzyme-like NAD(P)-binding protein -
  M4S28_RS16395 (M4S28_16395) rpmE 3616469..3616687 (-) 219 WP_004729688.1 50S ribosomal protein L31 -
  M4S28_RS16400 (M4S28_16400) priA 3617019..3619220 (+) 2202 WP_249632109.1 primosomal protein N' -
  M4S28_RS16405 (M4S28_16405) cytR 3619461..3620465 (+) 1005 WP_004729690.1 DNA-binding transcriptional regulator CytR Regulator
  M4S28_RS16410 (M4S28_16410) ftsN 3620588..3621127 (+) 540 WP_029222060.1 cell division protein FtsN -
  M4S28_RS16415 (M4S28_16415) hslV 3621350..3621898 (+) 549 WP_004729692.1 ATP-dependent protease subunit HslV -
  M4S28_RS16420 (M4S28_16420) hslU 3621957..3623297 (+) 1341 WP_017077598.1 HslU--HslV peptidase ATPase subunit -
  M4S28_RS16425 (M4S28_16425) - 3623453..3624370 (+) 918 WP_017080187.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  M4S28_RS16430 (M4S28_16430) rraA 3624444..3624962 (+) 519 WP_004729695.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36557.09 Da        Isoelectric Point: 6.4911

>NTDB_id=688342 M4S28_RS16405 WP_004729690.1 3619461..3620465(+) (cytR) [Vibrio sp. J383]
MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVETAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPTTATLCKFRQQGYQQALRRAGVSMNPAYSTVGDFTFEAGAQAVRQLLALPEQPTA
IFCHNDAMAIGAIQEAKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLKGNDVQAGSRLLE
AKLVVRGSTAPPRM

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=688342 M4S28_RS16405 WP_004729690.1 3619461..3620465(+) (cytR) [Vibrio sp. J383]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTCTCAACGGCAACGGTATCACGTGCATTGATGAACCCTGAAAA
AGTCTCGGTTTCTACTCGTAAACGAGTTGAGACAGCAGTACTTGAAGCTGGATACTCACCCAATACATTAGCTAGAAATT
TACGTCGCAACGAATCAAAAACCATCATCACTATCGTTCCTGATATCTGTGACCCTTACTTCGCCGAAATCATTCGTGGT
ATCGAAGATGCCGCTGTAGAGAATGACTACCTCGTTCTACTGGGTGACAGTGGCCAACAAAAGAAGCGTGAGTCTTCATT
TGTTAACTTGGTCTTCACAAAACAAGCAGACGGTATGCTACTGCTTGGCACTGATCATCCGTTTGATGTCAGTAAGCCTG
AGCAAAAGAATTTACCGCCAATGGTTATGGCGTGTGAATTCGCACCTGAGCTTGAACTGCCAACGGTTCACATCGACAAC
CTAACCTCTGCATTTGAAGCCGTGAATTACCTCGCTCAGTTAGGTCATAAGCGCATCGCTCAGATCTCTGGGCCAACGAC
TGCAACCCTGTGTAAGTTCCGTCAACAAGGCTACCAACAAGCATTGCGCCGCGCTGGAGTATCAATGAACCCAGCTTACA
GCACTGTGGGCGATTTCACCTTTGAAGCGGGTGCGCAAGCGGTTCGTCAATTACTAGCACTTCCTGAACAACCTACAGCG
ATCTTCTGTCATAACGATGCGATGGCGATTGGTGCGATTCAAGAAGCGAAGAAGCTAGGTTTACGCGTTCCTCAAGACCT
ATCGATTGTTGGCTTCGATGACATCCAATTCGCTCAATACTGCGATCCACCGCTAACCACTATTTCTCAGCCTCGTTATG
AGATTGGACGCCAAGCGATGTTGATGATGCTTGATCTATTGAAGGGCAACGATGTGCAAGCAGGTTCGCGTCTGCTTGAA
GCTAAATTAGTCGTTAGAGGCAGCACCGCACCACCTCGAATGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W4CDV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

89.759

99.401

0.892
  cytR Vibrio parahaemolyticus RIMD 2210633

87.988

99.701

0.877