Detailed information NTG0688332

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: M4S28_RS14985
• Genome accession: NZ_CP097293
• Coordinates: 3360222..3361202 (-)
• Length: 326 a.a.
• NCBI ID: WP_004735404.1
• Uniprot ID: A0A7W4C9S7
• Organism: Vibrio sp. J383
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3355222..3366202

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M4S28_RS14970 (M4S28_14970)	-	3356263..3356757 (-)	495	Protein_2851	ATPase domain-containing protein	-
M4S28_RS14975 (M4S28_14975)	pncC	3356897..3357391 (-)	495	WP_029222254.1	nicotinamide-nucleotide amidase	-
M4S28_RS14980 (M4S28_14980)	mutS	3357516..3360077 (+)	2562	WP_017092190.1	DNA mismatch repair protein MutS	-
M4S28_RS14985 (M4S28_14985)	rpoS	3360222..3361202 (-)	981	WP_004735404.1	RNA polymerase sigma factor RpoS	Regulator
M4S28_RS14990 (M4S28_14990)	nlpD	3361301..3362215 (-)	915	WP_054547474.1	murein hydrolase activator NlpD	-
M4S28_RS14995 (M4S28_14995)	-	3362250..3362876 (-)	627	WP_004735402.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
M4S28_RS15000 (M4S28_15000)	surE	3362877..3363620 (-)	744	WP_004735400.1	5'/3'-nucleotidase SurE	-
M4S28_RS15005 (M4S28_15005)	truD	3363697..3364743 (-)	1047	WP_029405000.1	tRNA pseudouridine(13) synthase TruD	-
M4S28_RS15010 (M4S28_15010)	ispF	3364766..3365245 (-)	480	WP_004735397.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
M4S28_RS15015 (M4S28_15015)	ispD	3365248..3365949 (-)	702	WP_017090808.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37244.51 Da
• Isoelectric Point: 5.4366

>NTDB_id=688332 M4S28_RS14985 WP_004735404.1 3360222..3361202(-) (rpoS) [Vibrio sp. J383]
MSISNAVTKEEFDLNQATTEPEALGKAKRTVKKKTEAKEEVEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=688332 M4S28_RS14985 WP_004735404.1 3360222..3361202(-) (rpoS) [Vibrio sp. J383]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGCAACCACGGAACCGGAAGCTCTTGGAAAAGC
AAAACGAACAGTCAAAAAGAAAACCGAAGCGAAAGAAGAAGTTGAAGTTACGTCTAAAAGTTTAGATGCTACTCAGCTTT
ATCTAGGCGAAATCGGTTTCTCACCACTACTAACCGCTGAAGAAGAAGTGCTTTATGCACGACGAGCTCTACGCGGTGAT
GAAGCAGCACGTAAACGCATGATCGAAAGTAACCTGCGTTTAGTGGTAAAAATTTCACGTCGTTATAGTAACCGTGGTCT
TGCACTTCTTGATCTTATTGAAGAAGGCAACCTAGGTTTGATTCGCGCCGTAGAGAAATTTGACCCAGAACGTGGTTTCC
GCTTCTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCGCTAATGAATCAGACTCGCACTATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTGCGTACCGCAAGAGAGCTATCACAAAAACTTGATCATGAACCAAC
GGCAGAAGAAATTGCTTCTAAGCTAGATAAGCCTGTTGGTGATGTGAGTAAGATGCTTCGTCTAAACGAAAGAGTGAGCT
CTGTTGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCAGACATCAACAATTCAGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCATTGATTTTCTGGCTTGATGAACTGAATCCTAAGCAGAAAGAGGTGCT
TGCACGTCGCTTTGGACTACTTGGTTACGAACCGTCAACACTAGAAGAAGTGGGCCGTGAAATTAGCCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGTGAGATTCTTATCAAGCAAGGTCTGAATATGGAAAATCTG
TTCAATGTAGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (167-240)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

3D structure

• AlphaFold DB: A0A7W4C9S7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.416	100	0.847