Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   M4S28_RS14775 Genome accession   NZ_CP097293
Coordinates   3317177..3317695 (-) Length   172 a.a.
NCBI ID   WP_017079953.1    Uniprot ID   A0A2J6U6Q3
Organism   Vibrio sp. J383     
Function   induction of competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 3315755..3317077 3317177..3317695 flank 100


Gene organization within MGE regions


Location: 3315755..3317695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4S28_RS14770 (M4S28_14770) - 3315755..3317077 (+) 1323 WP_009845967.1 IS4-like element ISVbsp1 family transposase -
  M4S28_RS14775 (M4S28_14775) luxS 3317177..3317695 (-) 519 WP_017079953.1 S-ribosylhomocysteine lyase Regulator

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18936.61 Da        Isoelectric Point: 4.4820

>NTDB_id=688329 M4S28_RS14775 WP_017079953.1 3317177..3317695(-) (luxS) [Vibrio sp. J383]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNQLNGSDVEIIDISP
MGCRTGFYMSLIGTPSEQQVADGWLAAMQDVLKVENQNKIPELNEYQCGTAAMHSLDEAKDIANAIIAAGISVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=688329 M4S28_RS14775 WP_017079953.1 3317177..3317695(-) (luxS) [Vibrio sp. J383]
ATGCCTTTATTAGATAGTTTCACTGTTGATCACACGCGCATGAACGCACCTGCAGTTCGTGTAGCTAAAACAATGCAAAC
CCCAAAAGGGGATACCATCACTGTGTTTGACCTGCGTTTTACTGCGCCAAACAAAGACATCCTATCTGAGAAAGGTATCC
ATACTCTAGAGCATCTATACGCAGGATTTATGCGTAATCAATTGAACGGTTCAGATGTAGAGATCATCGATATTTCACCG
ATGGGCTGTCGTACTGGTTTCTACATGAGCCTAATTGGTACGCCTTCAGAGCAGCAAGTAGCAGACGGTTGGTTGGCTGC
AATGCAAGATGTGCTGAAAGTTGAGAATCAAAATAAGATCCCTGAGCTGAACGAGTACCAATGTGGTACTGCGGCAATGC
ACTCTTTGGATGAAGCTAAAGATATCGCTAATGCGATCATCGCTGCCGGTATCTCTGTAAACAAAAATGATGAACTGGCA
TTGCCAGAGTCGATGCTTCAAGAGCTTAAGATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2J6U6Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884