Detailed information NTG0688318

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: M4S28_RS08285
• Genome accession: NZ_CP097293
• Coordinates: 1836940..1838364 (-)
• Length: 474 a.a.
• NCBI ID: WP_249631546.1
• Uniprot ID: -
• Organism: Vibrio sp. J383
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1831940..1843364

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M4S28_RS08260 (M4S28_08260)	-	1832405..1833058 (+)	654	WP_249631543.1	thiopurine S-methyltransferase	-
M4S28_RS08265 (M4S28_08265)	purT	1833274..1834449 (-)	1176	WP_017077980.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
M4S28_RS08270 (M4S28_08270)	cdd	1834617..1835504 (-)	888	WP_249631544.1	cytidine deaminase	-
M4S28_RS08275 (M4S28_08275)	-	1835863..1836540 (-)	678	WP_249631545.1	LrgB family protein	-
M4S28_RS08280 (M4S28_08280)	-	1836543..1836914 (-)	372	WP_017075118.1	CidA/LrgA family protein	-
M4S28_RS08285 (M4S28_08285)	sbcB	1836940..1838364 (-)	1425	WP_249631546.1	exodeoxyribonuclease I	Machinery gene
M4S28_RS08290 (M4S28_08290)	-	1839402..1839836 (+)	435	WP_004734871.1	DUF4402 domain-containing protein	-
M4S28_RS08295 (M4S28_08295)	-	1839889..1840326 (+)	438	WP_004734872.1	DUF4402 domain-containing protein	-
M4S28_RS08300 (M4S28_08300)	-	1840323..1841033 (+)	711	WP_249631547.1	DUF4832 domain-containing protein	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54630.93 Da
• Isoelectric Point: 4.9195

>NTDB_id=688318 M4S28_RS08285 WP_249631546.1 1836940..1838364(-) (sbcB) [Vibrio sp. J383]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRITPQKAASQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDMLDVMRAVHALRPEGIVWPENEEGYP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNDLVDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELDADELRDRLYTKRSELGEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQERKYEKSDDVDTHLYDGFFSPGDKTAMDIIRETDPNNLAALDITFGDE
RIKPLLFRYRARHFPWTLDEAEQLKWANHCREFYESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=688318 M4S28_RS08285 WP_249631546.1 1836940..1838364(-) (sbcB) [Vibrio sp. J383]
ATGAGTTCAGATAATCAGCCGACCTACTTCTTTTTCGATTACGAAACGTGGGGCGTTAGCCCAGCAAAAGACCGTCCGAG
TCAATTTGCGGGTGTTCGTACCGACCAAGATTTCAATGTTATTGGAGAGCCTCTAGTTATCTATTGCCAACCTCCTGCTG
ATTACCTCCCTGCGCCTGAAGCTGCACTGATCACCCGCATCACACCACAAAAAGCGGCTTCACAAGGTCTTCCTGAGCCA
GAGTTTATCGCTAAGATCCATGCCGAGTTGGCGAAACCAAACACCACAAGCCTTGGCTACAACAGTATTCGATTCGATGA
TGAAGTAACGCGTTACACCTGTTACCGAAACTTCATCGACCCATATGCGTGGAGTTGGCAGAACGGCAACTCGCGTTGGG
ATATGTTAGATGTAATGCGCGCTGTTCACGCACTGCGCCCTGAAGGCATTGTTTGGCCAGAGAACGAAGAAGGTTATCCA
AGCTTCAAACTGGAACACCTATCTGTGGCAAACGGCATTGAACATGAGAACGCGCACGATGCGATGGCCGATGTTATTGC
GACCATCGAGTTAGCGAAGAAGCTGAAAGCTGCACAGCCTAAGATGTTCGATTACCTTTACAACATGCGTCATAAGCGTA
AGCTGAATGACCTGGTTGATATTGTAAACATGACACCATTGATGCACGTTTCGGGCATGTTTGGTCGCGATTGTAACTAC
ACAAGCTGGATTGTGCCTATGGCTTGGCACCCAACCAATCAAAATGCCGTTATCGTGGTTGATTTAGCCAAAGATCCAAG
CCCACTGTTAGAACTGGACGCTGATGAACTCAGAGACAGACTCTACACCAAACGCAGTGAACTGGGTGAAGACGAGCTAC
CCGTACCCATCAAACTCGTCCAGTTGAACAAGTGCCCTATTCTTGCGCCAGCGAAAACCCTAACGGCTGAAAATGCGGAA
ACTATTGGTATCGATCGTCAACAGTGCTTAAAAAACTTAGCGCTATTACGTGAACATCCAGAGATCCGCGAGAAACTGAT
CGGTTTGTATTCGCAAGAACGCAAGTACGAAAAAAGCGACGACGTAGACACTCACCTTTACGACGGCTTCTTTTCGCCAG
GCGACAAAACCGCAATGGACATCATTCGTGAAACTGACCCAAATAACTTGGCAGCGTTAGACATCACTTTTGGTGACGAA
CGTATTAAGCCTTTGCTGTTCCGTTACCGCGCTCGACATTTCCCGTGGACGTTAGACGAAGCTGAACAACTGAAATGGGC
TAACCACTGTCGTGAGTTTTACGAAAGCCGTCTGGAAGAGTACATGCTGAATCTAGAGAACCTCGCACACGAACATGAAA
GTGACGAGAAGAAAATGGCTATCTTAAAAGCGGTTTATCAATACGTAGAAAAGCTAGCGAGCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	75.949	100	0.759