Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   M4S28_RS08195 Genome accession   NZ_CP097293
Coordinates   1820336..1821517 (-) Length   393 a.a.
NCBI ID   WP_249631534.1    Uniprot ID   -
Organism   Vibrio sp. J383     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1815336..1826517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4S28_RS08180 (M4S28_08180) - 1815823..1816725 (+) 903 WP_249632693.1 Vmh family MBL fold metallo-hydrolase -
  M4S28_RS08185 (M4S28_08185) - 1817034..1817849 (+) 816 WP_249631532.1 TauD/TfdA family dioxygenase -
  M4S28_RS08190 (M4S28_08190) - 1818106..1820154 (+) 2049 WP_249631533.1 hybrid sensor histidine kinase/response regulator -
  M4S28_RS08195 (M4S28_08195) cqsA 1820336..1821517 (-) 1182 WP_249631534.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  M4S28_RS08200 (M4S28_08200) - 1821876..1823258 (-) 1383 WP_249631535.1 PLP-dependent aminotransferase family protein -
  M4S28_RS08205 (M4S28_08205) - 1823362..1824255 (+) 894 WP_249631536.1 EamA family transporter -
  M4S28_RS08210 (M4S28_08210) - 1824399..1824794 (-) 396 WP_249631537.1 DUF1090 domain-containing protein -
  M4S28_RS08215 (M4S28_08215) - 1825000..1826004 (-) 1005 WP_249631538.1 GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43744.86 Da        Isoelectric Point: 6.1104

>NTDB_id=688317 M4S28_RS08195 WP_249631534.1 1820336..1821517(-) (cqsA) [Vibrio sp. J383]
MSDKTKTKPLPSFIEERLNFYIQDLITQNESQKHLVLGKRPKRNAVVMQSNDYLALSHDKTIQEAHQAAIVEHDDNVVMS
AIFLQDEQSKPAFETELANYVGMESCLLSQSGWAANIGLLQTICPPGTPVYIDFFAHMSLWEGIRAAGALAHPFMHNNMN
HLRKQLERHGSGVIVVDSVYSTIGTIAPLRDIYEMAQEFDCAVVVDESHSLGTHGENGAGLVHALGLTNQVDFITVSLAK
TFAYRAGAILGPKQLSETLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKGAEDKREALFKSAKSLTTGLKRIGFNIRSESQ
IVALECGSERNTERVRDFLEERDVFGAVFCRPATGKNKNIIRFSVNADMTPRDIDHVLTVCHEAYNHPELEFM

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=688317 M4S28_RS08195 WP_249631534.1 1820336..1821517(-) (cqsA) [Vibrio sp. J383]
ATGAGTGATAAAACAAAAACCAAACCACTACCTTCCTTTATCGAAGAACGCTTGAACTTCTATATTCAAGACCTGATTAC
CCAAAACGAAAGCCAAAAACATTTGGTATTGGGTAAACGACCTAAGCGCAATGCTGTTGTGATGCAGAGCAACGATTACT
TAGCACTATCACACGACAAAACGATCCAAGAAGCCCATCAAGCGGCGATTGTCGAACACGATGACAACGTGGTAATGTCT
GCAATTTTCTTACAAGATGAACAGTCTAAACCTGCGTTCGAAACTGAGCTCGCGAACTATGTCGGAATGGAGAGCTGTTT
GCTTTCTCAGTCTGGCTGGGCTGCTAATATTGGGCTATTGCAAACCATCTGCCCACCGGGCACACCTGTGTACATTGACT
TCTTTGCACACATGTCACTATGGGAAGGCATTCGCGCTGCAGGCGCCCTCGCCCACCCGTTTATGCATAACAATATGAAT
CACCTGCGCAAACAGCTAGAGCGCCACGGCTCAGGCGTTATTGTGGTCGATTCGGTTTACAGCACCATTGGGACCATCGC
CCCACTACGCGACATCTACGAAATGGCGCAAGAGTTTGATTGTGCCGTTGTCGTTGATGAATCGCATTCACTGGGTACGC
ATGGGGAAAATGGTGCTGGCTTAGTTCACGCATTGGGTCTCACTAACCAAGTCGACTTCATTACCGTTAGCTTGGCTAAA
ACCTTTGCCTATCGTGCAGGTGCTATCCTTGGGCCAAAGCAGCTTTCAGAAACCTTACCTTTTGTCGCGTATCCAGCTAT
TTTCAGCTCGACCGTGTTACCACAAGAGGTGGTTCGTTTAGAGAAAACATTAGAGGTAATAAAAGGCGCAGAAGACAAAC
GAGAAGCCTTATTCAAAAGCGCTAAATCGCTCACTACTGGTCTCAAACGGATTGGCTTTAACATCCGCAGCGAGTCTCAA
ATCGTGGCACTAGAGTGTGGTAGTGAAAGAAACACCGAACGTGTTCGTGATTTCCTCGAAGAACGAGATGTATTCGGTGC
GGTTTTCTGCCGCCCCGCGACGGGCAAGAACAAAAACATCATCCGCTTTTCAGTGAATGCCGACATGACACCAAGAGATA
TTGACCATGTGCTCACCGTTTGTCATGAAGCGTACAATCATCCGGAATTAGAGTTCATGTGA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.814

98.473

0.55