NTDB

Overview

Name	cytR	Type	Regulator
Locus tag	M4S28_RS00060	Genome accession	NZ_CP097293
Coordinates	10508..11512 (+)	Length	334 a.a.
NCBI ID	WP_004729690.1	Uniprot ID	A0A7W4CDV7
Organism	Vibrio sp. J383
Function	promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 5508..16512

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M4S28_RS00040 (M4S28_00040)	ftsN	5514..6053 (-)	540	WP_029222060.1	cell division protein FtsN	-
M4S28_RS00045 (M4S28_00045)	cytR	6176..7179 (-)	1004	Protein_7	DNA-binding transcriptional regulator CytR	-
M4S28_RS00050 (M4S28_00050)	priA	7420..8834 (-)	1415	Protein_8	primosomal protein N'	-
M4S28_RS00055 (M4S28_00055)	priA	8840..10267 (+)	1428	Protein_9	primosomal protein N'	-
M4S28_RS00060 (M4S28_00060)	cytR	10508..11512 (+)	1005	WP_004729690.1	DNA-binding transcriptional regulator CytR	Regulator
M4S28_RS00065 (M4S28_00065)	ftsN	11635..12174 (+)	540	WP_029222060.1	cell division protein FtsN	-
M4S28_RS00070 (M4S28_00070)	hslV	12397..12945 (+)	549	WP_004729692.1	ATP-dependent protease subunit HslV	-
M4S28_RS00075 (M4S28_00075)	hslU	13004..14344 (+)	1341	WP_017077598.1	HslU--HslV peptidase ATPase subunit	-
M4S28_RS00080 (M4S28_00080)	-	14500..15417 (+)	918	WP_017080187.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
M4S28_RS00085 (M4S28_00085)	rraA	15491..16009 (+)	519	WP_004729695.1	ribonuclease E activity regulator RraA	-
M4S28_RS00090 (M4S28_00090)	zapB	16122..16364 (-)	243	WP_004729696.1	cell division protein ZapB	-

Sequence

Protein

Download Length: 334 a.a. Molecular weight: 36557.09 Da Isoelectric Point: 6.4911

                                >NTDB_id=688303 M4S28_RS00060 WP_004729690.1 10508..11512(+) (cytR) [Vibrio sp. J383]

MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVETAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG

IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN

LTSAFEAVNYLAQLGHKRIAQISGPTTATLCKFRQQGYQQALRRAGVSMNPAYSTVGDFTFEAGAQAVRQLLALPEQPTA

IFCHNDAMAIGAIQEAKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLKGNDVQAGSRLLE

AKLVVRGSTAPPRM

Nucleotide

Download Length: 1005 bp

                                >NTDB_id=688303 M4S28_RS00060 WP_004729690.1 10508..11512(+) (cytR) [Vibrio sp. J383]

ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTCTCAACGGCAACGGTATCACGTGCATTGATGAACCCTGAAAA

AGTCTCGGTTTCTACTCGTAAACGAGTTGAGACAGCAGTACTTGAAGCTGGATACTCACCCAATACATTAGCTAGAAATT

TACGTCGCAACGAATCAAAAACCATCATCACTATCGTTCCTGATATCTGTGACCCTTACTTCGCCGAAATCATTCGTGGT

ATCGAAGATGCCGCTGTAGAGAATGACTACCTCGTTCTACTGGGTGACAGTGGCCAACAAAAGAAGCGTGAGTCTTCATT

TGTTAACTTGGTCTTCACAAAACAAGCAGACGGTATGCTACTGCTTGGCACTGATCATCCGTTTGATGTCAGTAAGCCTG

AGCAAAAGAATTTACCGCCAATGGTTATGGCGTGTGAATTCGCACCTGAGCTTGAACTGCCAACGGTTCACATCGACAAC

CTAACCTCTGCATTTGAAGCCGTGAATTACCTCGCTCAGTTAGGTCATAAGCGCATCGCTCAGATCTCTGGGCCAACGAC

TGCAACCCTGTGTAAGTTCCGTCAACAAGGCTACCAACAAGCATTGCGCCGCGCTGGAGTATCAATGAACCCAGCTTACA

GCACTGTGGGCGATTTCACCTTTGAAGCGGGTGCGCAAGCGGTTCGTCAATTACTAGCACTTCCTGAACAACCTACAGCG

ATCTTCTGTCATAACGATGCGATGGCGATTGGTGCGATTCAAGAAGCGAAGAAGCTAGGTTTACGCGTTCCTCAAGACCT

ATCGATTGTTGGCTTCGATGACATCCAATTCGCTCAATACTGCGATCCACCGCTAACCACTATTTCTCAGCCTCGTTATG

AGATTGGACGCCAAGCGATGTTGATGATGCTTGATCTATTGAAGGGCAACGATGTGCAAGCAGGTTCGCGTCTGCTTGAA

GCTAAATTAGTCGTTAGAGGCAGCACCGCACCACCTCGAATGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A7W4CDV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
cytR	Vibrio cholerae C6706	89.759	99.401	0.892
cytR	Vibrio parahaemolyticus RIMD 2210633	87.988	99.701	0.877

Detailed information NTG0688303