Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   M4X66_RS00545 Genome accession   NZ_CP097286
Coordinates   127702..129069 (+) Length   455 a.a.
NCBI ID   WP_025995640.1    Uniprot ID   -
Organism   Pseudomonas viridiflava strain JACO-C-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 122702..134069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4X66_RS00515 cydB 122851..123858 (+) 1008 WP_004884003.1 cytochrome d ubiquinol oxidase subunit II -
  M4X66_RS00520 - 123880..124047 (+) 168 WP_004884005.1 DUF2474 domain-containing protein -
  M4X66_RS00525 - 124143..125267 (-) 1125 WP_249583457.1 methyltransferase -
  M4X66_RS00530 - 125399..125632 (-) 234 WP_004884008.1 helix-turn-helix transcriptional regulator -
  M4X66_RS00535 - 125974..126750 (+) 777 WP_249583458.1 ferredoxin--NADP reductase -
  M4X66_RS00540 mscL 127063..127509 (-) 447 WP_004884015.1 large-conductance mechanosensitive channel protein MscL -
  M4X66_RS00545 radA 127702..129069 (+) 1368 WP_025995640.1 DNA repair protein RadA Machinery gene
  M4X66_RS00550 - 129076..129444 (-) 369 WP_249583459.1 PilZ domain-containing protein -
  M4X66_RS00555 - 129729..131804 (+) 2076 WP_025995639.1 carbon starvation CstA family protein -
  M4X66_RS00560 - 131832..132029 (+) 198 WP_004884022.1 YbdD/YjiX family protein -
  M4X66_RS00565 yjiA 132126..133103 (+) 978 WP_004884024.1 GTPase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48933.47 Da        Isoelectric Point: 6.8986

>NTDB_id=688250 M4X66_RS00545 WP_025995640.1 127702..129069(+) (radA) [Pseudomonas viridiflava strain JACO-C-5]
MAKAKRLYGCTECGATFPKWAGQCSDCGAWNTLVETMIESGAAAPPSGRASWTGAQAQIKTLAEVSVEEIPRFSTNSAEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAQRMPALYVTGEESQQQVAMRARRLGLPQDKLRVMTETCIESIIA
TARVEQPKVMVIDSIQTIFTEQLQSAPGGVAQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHMS
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAFKHGFKRAIVPKANAPKEAPPGFQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=688250 M4X66_RS00545 WP_025995640.1 127702..129069(+) (radA) [Pseudomonas viridiflava strain JACO-C-5]
ATGGCCAAGGCCAAACGCTTGTACGGCTGCACCGAGTGCGGCGCGACGTTTCCCAAATGGGCGGGCCAGTGCAGCGATTG
CGGCGCCTGGAACACGCTTGTCGAAACCATGATTGAAAGTGGTGCGGCCGCTCCCCCGAGTGGCCGAGCCAGCTGGACCG
GCGCGCAGGCGCAGATCAAGACATTGGCTGAAGTCAGTGTCGAGGAGATCCCGCGTTTCTCCACCAACTCCGCCGAGCTG
GACCGCGTGCTGGGCGGCGGTCTGGTAGACGGCTCCGTGGTGTTGATCGGCGGCGACCCCGGCATCGGCAAGTCCACGAT
TCTGCTGCAGACCCTGTGCAACATCGCCCAACGCATGCCCGCGCTGTACGTTACCGGCGAAGAGTCCCAGCAGCAGGTCG
CCATGCGTGCCCGCCGTCTTGGGCTGCCGCAGGACAAGCTGCGAGTGATGACCGAGACCTGCATCGAGTCCATCATCGCC
ACGGCGCGTGTCGAGCAGCCGAAGGTGATGGTGATCGACTCCATCCAGACCATTTTCACCGAGCAACTGCAATCGGCTCC
CGGCGGTGTGGCGCAGGTGCGCGAAAGTGCTGCGTTGCTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATCTTTCTGG
TCGGCCACGTAACCAAGGAAGGCGCGCTGGCCGGGCCGCGCGTACTGGAACACATGGTTGATACCGTGCTGTATTTCGAA
GGTGAGTCCGATGGACGCTTGCGTCTGTTGCGGGCCGTGAAGAATCGCTTTGGCGCTGTGAACGAACTGGGCGTTTTCGG
CATGACCGACAAGGGCCTGAAAGAGGTTTCCAACCCGTCGGCGATCTTCCTCACTCGTGCGCAGGAAGAAGTGCCGGGCA
GCGTGGTCATGGCCACATGGGAAGGCACCCGGCCGATGCTGGTCGAAGTCCAGGCGCTGGTGGACGACAGCCATATGTCC
AACCCGCGTCGCGTGACGCTGGGTCTGGACCAGAACCGGCTGGCGATGTTGCTGGCGGTTCTGCACCGGCATGGCGGGAT
TCCGACTCACGATCAGGACGTGTTTCTCAACGTGGTCGGCGGCGTGAAAGTGCTGGAAACCGCGTCCGACCTGGCCTTGA
TGGCGGCGGTCATGTCCAGCCTGCGCAACCGACCGCTGCCGCATGACCTGCTGGTCTTCGGTGAAGTAGGGCTGTCAGGT
GAGGTCAGGCCGGTGCCCAGCGGGCAGGAGCGCCTCAAGGAGGCGTTCAAGCACGGCTTCAAACGGGCCATCGTGCCCAA
GGCCAATGCGCCGAAAGAGGCGCCTCCAGGCTTTCAGATCATCGCCGTGACCCGTCTGGAGCAGGCACTGGACGCACTGT
TTGAGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.904

100

0.49
  radA Streptococcus mitis SK321

47.149

100

0.473
  radA Streptococcus mitis NCTC 12261

46.93

100

0.47
  radA Streptococcus pneumoniae Rx1

46.93

100

0.47
  radA Streptococcus pneumoniae D39

46.93

100

0.47
  radA Streptococcus pneumoniae R6

46.93

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.47