Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   M5C96_RS24640 Genome accession   NZ_CP097269
Coordinates   5243789..5245168 (-) Length   459 a.a.
NCBI ID   WP_272565927.1    Uniprot ID   A0AAN5AZM1
Organism   Acidovorax sp. GBBC 1281     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5238789..5250168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5C96_RS24610 (M5C96_24600) - 5238953..5239927 (-) 975 WP_272565920.1 glycosyltransferase -
  M5C96_RS24615 (M5C96_24605) - 5239947..5241263 (-) 1317 WP_272565921.1 O-antigen ligase family protein -
  M5C96_RS24620 (M5C96_24610) - 5241260..5242060 (-) 801 WP_272565923.1 glycosyltransferase family 2 protein -
  M5C96_RS24625 (M5C96_24615) - 5242064..5242270 (-) 207 WP_272549760.1 zinc-finger domain-containing protein -
  M5C96_RS24630 (M5C96_24620) - 5242276..5243214 (-) 939 WP_272565924.1 branched-chain amino acid transaminase -
  M5C96_RS24635 (M5C96_24625) - 5243257..5243706 (-) 450 WP_272565926.1 glycerate kinase -
  M5C96_RS24640 (M5C96_24630) radA 5243789..5245168 (-) 1380 WP_272565927.1 DNA repair protein RadA Machinery gene
  M5C96_RS24645 (M5C96_24635) - 5245389..5245712 (+) 324 WP_272565928.1 hypothetical protein -
  M5C96_RS24650 (M5C96_24640) - 5245823..5246800 (+) 978 WP_272565929.1 2-dehydropantoate 2-reductase -
  M5C96_RS24655 (M5C96_24645) - 5246936..5247544 (+) 609 WP_272565930.1 glutathione S-transferase family protein -
  M5C96_RS24660 (M5C96_24650) - 5247675..5249267 (-) 1593 WP_272565931.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 48086.61 Da        Isoelectric Point: 6.7602

>NTDB_id=688248 M5C96_RS24640 WP_272565927.1 5243789..5245168(-) (radA) [Acidovorax sp. GBBC 1281]
MAKEKTLFTCSECGGTSPRWLGKCPACGAWNTLVETVAEAGPGKNRLSAPQFSGLAQAQAVMPLAAIEATDIARTPSGID
ELDRVLGGGIVEGGVVLIGGDPGIGKSTLLLQALDALQRVGLPTLYVTGEESGAQVALRSRRLGLDHSQVNVLAEIQLEK
ILATIDATQPAVAVIDSIQTVYSDQLTSAPGSVAQVRECAAHLTRAAKASGVTIILVGHVTKEGALAGPRVLEHMVDTVL
YFEGDTHSQFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVTNPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVDEG
GPSPRRLSVGLDRDRLAMLLAVLHRHAGVACMDQDVFVNAVGGVRISEPAADLAVMLSITSSLRGKPLPKGFIAFGEVGL
AGEVRPAPRGQERLKEAAKLGFSVAVVPKANAPKKPIEGITIHAVERVEEAMEVVRGMG

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=688248 M5C96_RS24640 WP_272565927.1 5243789..5245168(-) (radA) [Acidovorax sp. GBBC 1281]
ATGGCCAAAGAAAAAACCCTCTTCACCTGCTCCGAGTGCGGCGGCACCAGCCCGCGCTGGCTGGGCAAATGCCCGGCCTG
CGGTGCCTGGAACACCCTGGTCGAAACCGTGGCCGAGGCCGGCCCGGGCAAGAACCGCCTCAGCGCGCCGCAGTTTTCGG
GCCTGGCGCAGGCCCAGGCGGTGATGCCGCTGGCCGCCATCGAGGCGACCGACATCGCCCGCACGCCGAGCGGCATCGAC
GAGCTGGACCGGGTGCTGGGCGGCGGCATCGTGGAGGGCGGCGTGGTGCTGATCGGCGGCGACCCGGGCATCGGCAAGTC
CACGCTGCTGCTGCAGGCGCTGGATGCGCTGCAGCGCGTGGGCCTGCCCACGCTGTACGTGACGGGCGAGGAAAGCGGCG
CGCAGGTGGCGCTGCGCTCGCGCCGCCTGGGCCTGGACCACAGCCAGGTGAACGTGCTGGCCGAGATCCAGCTGGAGAAG
ATTCTCGCCACCATCGATGCCACCCAGCCGGCCGTGGCGGTGATCGACTCGATCCAGACGGTGTACTCCGACCAGCTCAC
GAGCGCGCCCGGGTCGGTGGCCCAGGTGCGCGAGTGCGCGGCGCACCTCACGCGGGCGGCCAAGGCCTCGGGCGTGACCA
TCATCCTCGTGGGCCACGTCACCAAGGAGGGGGCGCTCGCCGGCCCGCGCGTGCTGGAGCACATGGTCGATACGGTGCTG
TACTTCGAAGGCGACACGCACAGCCAGTTCCGCTTGGTGCGCGCCATCAAGAACCGCTTCGGCGCGGTCAACGAGATCGG
CGTGTTCGCCATGACGGAAAAGGGCCTCAAGGGCGTGACCAACCCGAGCGCCATCTTCCTGAGCCAGCACAGCGAGCCCG
TGCCCGGCAGCTGCGTGCTGGTCACGCTGGAGGGCACGCGGCCCATGCTGGTGGAGATCCAGGCGCTGGTGGACGAGGGC
GGCCCCAGCCCGCGCCGGCTGTCGGTGGGGCTGGACCGCGACCGCCTGGCCATGCTGCTGGCGGTGCTGCACCGGCACGC
CGGCGTGGCCTGCATGGACCAGGACGTGTTCGTGAACGCCGTGGGCGGCGTGCGCATCAGCGAGCCCGCGGCCGACCTGG
CGGTGATGCTGTCCATCACCTCCAGCCTGCGCGGCAAGCCATTGCCCAAAGGATTCATCGCCTTCGGCGAAGTGGGACTG
GCCGGCGAGGTGCGCCCGGCCCCGCGCGGTCAGGAGCGGCTCAAGGAGGCGGCCAAGCTGGGCTTCAGCGTGGCCGTGGT
GCCCAAGGCCAATGCGCCCAAGAAGCCCATCGAGGGCATCACCATCCATGCGGTGGAGCGGGTGGAGGAGGCGATGGAGG
TGGTGCGCGGCATGGGCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.675

100

0.499
  radA Streptococcus mitis NCTC 12261

46.272

99.346

0.46
  radA Streptococcus mitis SK321

46.272

99.346

0.46
  radA Streptococcus pneumoniae TIGR4

47.085

97.168

0.458
  radA Streptococcus pneumoniae R6

47.085

97.168

0.458
  radA Streptococcus pneumoniae Rx1

47.085

97.168

0.458
  radA Streptococcus pneumoniae D39

47.085

97.168

0.458