Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   M5C98_RS22740 Genome accession   NZ_CP097267
Coordinates   4988039..4989418 (-) Length   459 a.a.
NCBI ID   WP_272549763.1    Uniprot ID   -
Organism   Acidovorax sp. NCPPB 3576     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4983039..4994418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5C98_RS22710 (M5C98_22710) - 4983223..4984197 (-) 975 WP_272549756.1 glycosyltransferase -
  M5C98_RS22715 (M5C98_22715) - 4984217..4985536 (-) 1320 WP_272549758.1 O-antigen ligase family protein -
  M5C98_RS22720 (M5C98_22720) - 4985533..4986333 (-) 801 WP_272549759.1 glycosyltransferase family 2 protein -
  M5C98_RS22725 (M5C98_22725) - 4986337..4986543 (-) 207 WP_272549760.1 zinc-finger domain-containing protein -
  M5C98_RS22730 (M5C98_22730) - 4986549..4987487 (-) 939 WP_092744587.1 branched-chain amino acid transaminase -
  M5C98_RS22735 (M5C98_22735) - 4987530..4987979 (-) 450 WP_272549761.1 glycerate kinase -
  M5C98_RS22740 (M5C98_22740) radA 4988039..4989418 (-) 1380 WP_272549763.1 DNA repair protein RadA Machinery gene
  M5C98_RS22745 (M5C98_22745) - 4989641..4989964 (+) 324 WP_272549764.1 hypothetical protein -
  M5C98_RS22750 (M5C98_22750) - 4990075..4991052 (+) 978 WP_272549766.1 2-dehydropantoate 2-reductase -
  M5C98_RS22755 (M5C98_22755) - 4991183..4991791 (+) 609 WP_272549767.1 glutathione S-transferase family protein -
  M5C98_RS22760 (M5C98_22760) - 4991805..4993397 (-) 1593 WP_272549768.1 ABC transporter substrate-binding protein -
  M5C98_RS22765 (M5C98_22765) - 4993513..4994358 (-) 846 WP_272549769.1 hypothetical protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 48102.61 Da        Isoelectric Point: 6.7602

>NTDB_id=688229 M5C98_RS22740 WP_272549763.1 4988039..4989418(-) (radA) [Acidovorax sp. NCPPB 3576]
MAKEKTLFTCSECGGTSPRWLGKCPACGAWNTLVETVAEAAPGKNRLSAPQFSGLAQAQAVMPLAAIEATDIARTPSGID
ELDRVLGGGIVEGGVVLIGGDPGIGKSTLLLQALDALQRVGLPTLYVTGEESGAQVALRSRRLGLDHSQVNVLAEIQLEK
ILATIDATQPAVAVIDSIQTVYSDQLTSAPGSVAQVRECAAHLTRAAKASGVTIILVGHVTKEGALAGPRVLEHMVDTVL
YFEGDTHSQFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVTNPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVDEG
GPSPRRLSVGLDRDRLAMLLAVLHRHAGVACMDQDVFVNAVGGVRISEPAADLAVMLSITSSLRGKALPRGFIAFGEVGL
AGEVRPAPRGQERLKEAAKLGFSVAVVPKANAPKKPIEGITIHAVERVEEAMEVVRGMG

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=688229 M5C98_RS22740 WP_272549763.1 4988039..4989418(-) (radA) [Acidovorax sp. NCPPB 3576]
ATGGCCAAAGAAAAAACCCTCTTCACCTGCTCCGAGTGCGGCGGCACCAGCCCGCGCTGGCTGGGCAAATGCCCTGCTTG
CGGTGCCTGGAACACCCTGGTCGAAACCGTGGCCGAGGCCGCTCCGGGCAAGAACCGCCTCAGTGCGCCGCAGTTCTCGG
GCCTGGCCCAGGCCCAGGCGGTGATGCCGCTGGCCGCCATCGAGGCGACCGACATCGCCCGCACCCCGAGCGGCATCGAC
GAACTGGACCGGGTGCTGGGCGGCGGCATCGTGGAAGGCGGCGTGGTGCTGATCGGCGGCGACCCGGGCATCGGCAAATC
CACGCTGCTGCTGCAGGCGCTGGATGCGCTGCAGCGCGTGGGCCTGCCCACGCTGTACGTGACGGGCGAGGAAAGCGGCG
CGCAGGTGGCGCTGCGCTCTCGCCGCCTGGGCCTGGACCACAGCCAGGTGAACGTGCTGGCCGAGATCCAGCTGGAAAAG
ATCCTCGCCACCATCGACGCCACCCAGCCCGCCGTGGCGGTGATCGACTCGATCCAGACGGTGTACTCCGACCAGCTCAC
GAGCGCCCCCGGGTCGGTGGCGCAGGTGCGCGAATGCGCTGCGCACCTCACGCGGGCGGCCAAGGCCTCGGGCGTGACCA
TCATCCTCGTGGGCCACGTCACCAAGGAAGGGGCGCTTGCCGGCCCGCGCGTGCTGGAGCACATGGTCGATACGGTGCTG
TACTTCGAAGGCGACACGCACAGCCAGTTCCGCCTGGTGCGCGCCATCAAGAACCGCTTCGGCGCGGTCAACGAGATCGG
CGTGTTCGCCATGACGGAAAAGGGCCTCAAGGGCGTGACCAACCCGAGCGCCATCTTCCTGAGCCAGCACAGCGAGCCCG
TGCCCGGCAGTTGCGTGCTGGTCACGCTGGAGGGCACGCGGCCCATGCTGGTGGAGATCCAGGCGCTGGTGGACGAGGGC
GGCCCCAGCCCGCGCCGGCTCTCGGTGGGGCTGGACCGCGACCGCCTGGCCATGCTGCTTGCGGTGTTGCACCGGCATGC
CGGCGTGGCCTGCATGGACCAGGACGTGTTCGTTAACGCAGTGGGCGGCGTGCGCATCAGCGAGCCGGCGGCCGACCTGG
CGGTGATGCTGTCCATCACCTCCAGCCTGCGCGGCAAAGCACTCCCCCGCGGGTTCATTGCCTTCGGCGAAGTGGGGCTG
GCCGGCGAGGTGCGCCCGGCCCCGCGCGGGCAGGAACGGCTCAAGGAGGCGGCCAAGCTGGGCTTCAGCGTGGCCGTGGT
GCCCAAGGCCAATGCGCCCAAGAAGCCCATCGAGGGCATCACCATCCACGCGGTGGAGCGGGTGGAGGAGGCGATGGAAG
TGGTGCGGGGCATGGGCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.675

100

0.499
  radA Streptococcus mitis NCTC 12261

46.053

99.346

0.458
  radA Streptococcus mitis SK321

46.053

99.346

0.458
  radA Streptococcus pneumoniae TIGR4

46.861

97.168

0.455
  radA Streptococcus pneumoniae D39

46.861

97.168

0.455
  radA Streptococcus pneumoniae Rx1

46.861

97.168

0.455
  radA Streptococcus pneumoniae R6

46.861

97.168

0.455