Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   M5C98_RS21820 Genome accession   NZ_CP097267
Coordinates   4786666..4788255 (-) Length   529 a.a.
NCBI ID   WP_272549549.1    Uniprot ID   -
Organism   Acidovorax sp. NCPPB 3576     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4781666..4793255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5C98_RS21800 (M5C98_21800) - 4782059..4782538 (-) 480 WP_272549545.1 putative toxin-antitoxin system toxin component, PIN family -
  M5C98_RS21805 (M5C98_21805) - 4782528..4783799 (-) 1272 WP_272549546.1 THUMP domain-containing protein -
  M5C98_RS21810 (M5C98_21810) - 4784005..4785867 (+) 1863 WP_272549547.1 methyl-accepting chemotaxis protein -
  M5C98_RS21815 (M5C98_21815) - 4786091..4786636 (+) 546 WP_272549548.1 TspO/MBR family protein -
  M5C98_RS21820 (M5C98_21820) rpoN/rpoN1 4786666..4788255 (-) 1590 WP_272549549.1 RNA polymerase factor sigma-54 Machinery gene
  M5C98_RS21825 (M5C98_21825) lptB 4788344..4789126 (-) 783 WP_272549551.1 LPS export ABC transporter ATP-binding protein -
  M5C98_RS21830 (M5C98_21830) lptA 4789126..4789785 (-) 660 WP_272549552.1 lipopolysaccharide transport periplasmic protein LptA -
  M5C98_RS21835 (M5C98_21835) - 4789910..4790569 (-) 660 WP_272549554.1 thiol:disulfide interchange protein DsbA/DsbL -
  M5C98_RS21840 (M5C98_21840) - 4790627..4791274 (-) 648 WP_272549555.1 SPOR domain-containing protein -
  M5C98_RS21845 (M5C98_21845) argS 4791287..4792996 (-) 1710 WP_272549556.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 57674.67 Da        Isoelectric Point: 4.6476

>NTDB_id=688227 M5C98_RS21820 WP_272549549.1 4786666..4788255(-) (rpoN/rpoN1) [Acidovorax sp. NCPPB 3576]
MKPGLSLRVSQHLALTPQLQQSIRLLQLSTLELSQEVEQMLDENPFLERTAEEAAREEFGLPQADAPVSEDDRHTEDAIY
SGASSEASTAAEASSSEGDSASAAEAPGSADAPDWEGDGTVEMMPDDGEWGGDAPARTRTAGEGDDADATELARSHESLT
AYLHRQALGLRLSEVDTAALRFLIESLNDDGYLDESLPSLAVSLAGEEDTEQVEELVHRFTVALGLLQSLDPVGVGARGL
AECLTLQLKALREDGEGDPDVVQTALRICQQPLEMLARRDVRRLAQACGGGEERTRAAMALIARLEPRPGRAFAEVERNI
IVPDVIVKKTGRSTQQNFSVQLNPDVMPRLRVHDIYAGALRGNRGGEGHQGLQQRLQEARWFIKNIQQRFDTILRVSRAI
VDRQKNFFVHGELAMRPLVLRDIADELGLHESTISRVTTAKYMATPQGTYELKYFFGSGLGTETGGNASSTAVRALIKQF
VSAESPAKPLSDSQIAEMLKEQGIECARRTVAKYREALKIAPANLRKAL

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=688227 M5C98_RS21820 WP_272549549.1 4786666..4788255(-) (rpoN/rpoN1) [Acidovorax sp. NCPPB 3576]
ATGAAGCCTGGGCTGTCGCTGCGCGTCTCGCAGCATCTGGCACTCACGCCGCAGTTGCAGCAGTCCATCCGGCTGCTGCA
GTTGTCCACCCTGGAACTGTCGCAAGAGGTCGAGCAGATGCTCGACGAAAACCCTTTCCTCGAACGCACCGCCGAAGAGG
CCGCGCGCGAAGAATTCGGCCTGCCGCAGGCCGATGCGCCCGTGAGCGAGGACGACCGCCACACCGAGGACGCGATCTAT
TCAGGCGCATCGAGTGAGGCCAGTACGGCGGCGGAGGCCTCTTCTTCGGAGGGCGATTCCGCCAGCGCCGCCGAGGCGCC
TGGCAGCGCGGACGCCCCCGACTGGGAAGGCGACGGCACCGTCGAGATGATGCCGGACGACGGCGAATGGGGCGGCGACG
CCCCGGCGCGCACGCGCACGGCCGGCGAGGGCGACGATGCCGACGCCACCGAACTGGCCCGCAGCCACGAGTCGCTCACC
GCCTACCTGCACCGGCAGGCGCTGGGCCTGCGCCTGTCCGAGGTCGATACCGCGGCGCTGCGTTTTCTCATCGAATCGCT
CAACGACGACGGCTATCTGGACGAGTCGCTGCCGTCGCTGGCCGTGAGCCTGGCGGGCGAGGAAGACACCGAGCAGGTCG
AGGAACTGGTGCACCGCTTCACCGTGGCGCTCGGCCTGCTGCAGAGCCTGGACCCGGTCGGCGTGGGCGCACGCGGCCTG
GCCGAGTGCCTGACCCTGCAGCTCAAGGCGCTGCGCGAGGACGGCGAGGGCGACCCGGACGTGGTGCAGACCGCGCTGCG
CATCTGCCAGCAGCCGCTGGAGATGCTCGCGCGGCGCGACGTGCGGCGCCTGGCGCAGGCCTGTGGCGGCGGCGAGGAGC
GCACGCGTGCGGCCATGGCCCTGATCGCCCGCCTGGAGCCCCGGCCCGGGCGCGCCTTCGCCGAGGTGGAGCGCAACATC
ATCGTGCCCGACGTCATCGTGAAGAAGACCGGGCGCAGCACGCAGCAGAACTTCAGCGTGCAGCTCAACCCCGATGTGAT
GCCGCGCCTGCGCGTGCACGACATCTACGCCGGTGCGCTGCGCGGCAACCGGGGCGGCGAGGGCCACCAGGGCCTGCAGC
AGCGGCTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTCGACACCATCCTGCGCGTGTCGCGCGCCATC
GTGGACCGGCAGAAGAACTTCTTCGTGCACGGCGAGCTGGCCATGCGGCCGCTGGTGCTGCGCGACATCGCCGACGAACT
GGGCCTGCACGAGTCCACCATCAGCCGCGTGACCACGGCCAAGTACATGGCCACGCCGCAGGGCACGTACGAACTCAAGT
ATTTCTTCGGCTCGGGCCTGGGCACCGAGACCGGGGGCAACGCCTCCAGCACGGCGGTGCGGGCGCTCATCAAGCAGTTC
GTCTCGGCCGAGAGCCCGGCCAAGCCGCTGTCGGACAGCCAGATCGCCGAGATGCTGAAGGAGCAGGGCATCGAGTGCGC
CCGCCGCACCGTGGCCAAGTACCGCGAGGCGCTCAAGATCGCGCCGGCCAACCTGCGCAAGGCGCTGTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(371-527)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(150-356)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

53.659

100

0.541