Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   M5C98_RS19610 Genome accession   NZ_CP097267
Coordinates   4296930..4297328 (-) Length   132 a.a.
NCBI ID   WP_092741676.1    Uniprot ID   -
Organism   Acidovorax sp. NCPPB 3576     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4291930..4302328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5C98_RS19595 (M5C98_19605) - 4293720..4295999 (-) 2280 WP_272549106.1 methyl-accepting chemotaxis protein -
  M5C98_RS19600 (M5C98_19610) - 4296021..4296548 (-) 528 WP_272549107.1 chemotaxis protein CheW -
  M5C98_RS19605 (M5C98_19615) - 4296565..4296930 (-) 366 WP_092741674.1 response regulator -
  M5C98_RS19610 (M5C98_19620) pilG 4296930..4297328 (-) 399 WP_092741676.1 response regulator Regulator
  M5C98_RS19615 (M5C98_19625) - 4297380..4297553 (-) 174 WP_272549108.1 rubredoxin -
  M5C98_RS19620 (M5C98_19630) - 4297649..4298599 (+) 951 WP_272549109.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  M5C98_RS19625 (M5C98_19635) hemL 4298583..4299896 (+) 1314 WP_272549110.1 glutamate-1-semialdehyde 2,1-aminomutase -
  M5C98_RS19630 - 4300043..4301299 (+) 1257 WP_272549111.1 pectate lyase -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14596.83 Da        Isoelectric Point: 7.7120

>NTDB_id=688222 M5C98_RS19610 WP_092741676.1 4296930..4297328(-) (pilG) [Acidovorax sp. NCPPB 3576]
MTTTGASFKVLVVDDSNTIRRSAEIFLKQGGHEVLLADDGFDALAKVNDYQPQLIFCDILMPKLDGYQTCAIIKRNARFA
DTPVVMLSSKDGVFDKARGRMVGCQEYLTKPFTKDQLLKAVQQFGNAQQGAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=688222 M5C98_RS19610 WP_092741676.1 4296930..4297328(-) (pilG) [Acidovorax sp. NCPPB 3576]
TTGACTACAACAGGCGCATCCTTCAAGGTGCTCGTCGTGGATGACAGCAACACCATCCGCCGCAGCGCAGAAATCTTCCT
CAAGCAGGGCGGCCACGAAGTGCTGCTCGCCGATGATGGCTTCGATGCCTTGGCCAAGGTCAACGACTACCAGCCCCAGT
TGATCTTCTGCGACATCCTGATGCCCAAGCTGGACGGCTATCAGACCTGCGCCATCATCAAGCGCAACGCGCGCTTCGCC
GACACGCCCGTCGTGATGCTGTCCTCCAAGGACGGCGTTTTCGACAAGGCGCGTGGACGCATGGTGGGGTGCCAGGAATA
TCTCACCAAACCATTTACCAAAGACCAGTTGCTGAAAGCAGTTCAGCAGTTCGGTAATGCCCAACAAGGAGCGATGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

57.265

88.636

0.508