Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   M3Y14_RS25870 Genome accession   NZ_CP097257
Coordinates   4868547..4869896 (-) Length   449 a.a.
NCBI ID   WP_264541229.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain Bt Gxmzu777-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4863547..4874896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3Y14_RS25845 (M3Y14_25765) - 4866168..4866347 (-) 180 Protein_5121 WYL domain-containing protein -
  M3Y14_RS25850 (M3Y14_25770) - 4866344..4866583 (+) 240 Protein_5122 VOC family protein -
  M3Y14_RS25855 (M3Y14_25775) hpf 4866655..4867197 (-) 543 WP_000671183.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  M3Y14_RS25860 (M3Y14_25780) cspC 4867519..4867716 (-) 198 WP_001990088.1 cold shock protein CspC -
  M3Y14_RS25865 (M3Y14_25785) - 4867843..4868547 (-) 705 WP_264539451.1 ComF family protein -
  M3Y14_RS25870 (M3Y14_25790) comFA 4868547..4869896 (-) 1350 WP_264541229.1 ATP-dependent helicase ComFA Machinery gene
  M3Y14_RS25875 (M3Y14_25795) - 4870027..4871352 (-) 1326 WP_264539452.1 NlpC/P60 family protein -
  M3Y14_RS25880 (M3Y14_25800) - 4871586..4871900 (-) 315 WP_002112882.1 winged helix-turn-helix transcriptional regulator -
  M3Y14_RS25885 (M3Y14_25805) - 4872074..4872916 (-) 843 WP_219920858.1 DegV family protein -
  M3Y14_RS25890 (M3Y14_25810) - 4873093..4873284 (-) 192 WP_264541258.1 hypothetical protein -
  M3Y14_RS25895 (M3Y14_25815) - 4873309..4873944 (+) 636 WP_264539453.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51051.44 Da        Isoelectric Point: 9.2464

>NTDB_id=688179 M3Y14_RS25870 WP_264541229.1 4868547..4869896(-) (comFA) [Bacillus thuringiensis strain Bt Gxmzu777-1]
MLAGRQLLLEELSSDWQDKLDHLKKNREVVCVQGVIKKSSKYMCQRCGNMEQRLFASFLCKRCNKVCTYCRKCITMGRVS
ECAVLVRGIAEISGENYLNPLQWEGVLSAGQELAAQSVVDAVKQKESFFIWAVCGAGKTEMLFHGIAEALQKGERVCIAT
PRTDVVLELAPRLQEVFPNINVAALYGGSLDREKDAALIVATTHQLLRYYRAFHVMIVDEIDAFPYHADKMLQYAVNEAM
KEKAAHIYLTATPDEKWKRKLRNGKQKGVIISGRYHRHPLPVPAFRWCGNWKKDLMRNKIPRAVLQWLNMYLDKQYPIFL
FVPHIRYVEEISFLLKSINSQIDGVHAEDPKRKEKVAAFRKGEIPLLVTTTILERGITVKNLQVVVLGAEEEIFSESALV
QIAGRAGRSSDEPHGDVIYFHYGKTEAMVRAKKHIQSMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=688179 M3Y14_RS25870 WP_264541229.1 4868547..4869896(-) (comFA) [Bacillus thuringiensis strain Bt Gxmzu777-1]
ATGTTAGCTGGTAGACAGTTACTGTTAGAAGAACTTTCTTCAGATTGGCAGGATAAATTGGATCATTTGAAAAAGAATCG
AGAAGTCGTTTGTGTACAAGGGGTAATTAAGAAGTCTTCAAAATATATGTGCCAACGCTGCGGAAATATGGAGCAGCGGC
TATTTGCATCATTTCTATGTAAAAGATGCAATAAAGTATGTACGTATTGCCGAAAATGTATAACTATGGGCAGGGTAAGT
GAATGTGCTGTACTTGTTCGCGGGATTGCTGAAATAAGCGGAGAAAATTATTTGAATCCGTTACAGTGGGAAGGTGTTTT
GTCTGCTGGTCAGGAGTTAGCTGCGCAAAGTGTCGTTGACGCTGTTAAGCAGAAAGAATCATTTTTTATTTGGGCGGTGT
GCGGGGCTGGGAAGACAGAAATGTTGTTTCATGGAATTGCAGAAGCACTTCAAAAAGGAGAGAGAGTTTGTATTGCAACG
CCGAGAACGGACGTTGTACTTGAATTAGCACCAAGATTACAAGAAGTGTTTCCAAATATAAATGTAGCTGCTTTATACGG
AGGGAGTTTAGACCGAGAAAAAGATGCGGCGTTAATCGTTGCAACTACACATCAATTGTTACGTTATTATAGGGCGTTCC
ATGTCATGATTGTAGATGAGATAGATGCTTTTCCATATCATGCGGATAAGATGTTGCAGTATGCAGTAAACGAAGCGATG
AAAGAGAAAGCAGCACATATTTATTTAACGGCAACTCCAGATGAAAAGTGGAAGCGTAAATTGCGGAATGGTAAGCAAAA
AGGAGTTATTATTTCAGGGCGTTATCATCGTCATCCCTTGCCAGTTCCAGCATTTCGGTGGTGCGGAAATTGGAAAAAAG
ACCTCATGCGTAACAAAATCCCTCGGGCCGTATTACAATGGCTAAACATGTACTTAGATAAACAATATCCCATTTTTCTA
TTTGTTCCCCATATACGATACGTAGAAGAAATCAGCTTCTTATTAAAATCAATAAACAGTCAAATTGACGGTGTGCACGC
AGAAGATCCGAAGAGAAAAGAAAAGGTTGCGGCTTTTCGAAAGGGAGAAATTCCTTTATTAGTTACAACGACGATCTTGG
AACGAGGGATAACTGTGAAGAATTTACAAGTAGTAGTTTTAGGAGCAGAAGAAGAAATATTTTCAGAAAGTGCTCTCGTT
CAAATCGCAGGGCGCGCTGGTAGAAGTTCTGATGAACCGCATGGAGATGTTATCTATTTTCATTATGGAAAGACAGAGGC
GATGGTGCGTGCGAAAAAACATATTCAAAGTATGAATAAGAATGCTAAAGAACAAGGATTGATAGATTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(107-254)

Helicase conserved C-terminal domain (Helicase_C)

(313-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.131

98.441

0.503