Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   OS079_RS08580 Genome accession   NZ_CP113042
Coordinates   1708136..1709218 (+) Length   360 a.a.
NCBI ID   WP_267837893.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Seraphine     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1703136..1714218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS079_RS08560 gdpS 1703508..1704578 (-) 1071 WP_000460983.1 GGDEF domain-containing protein GdpS -
  OS079_RS08565 - 1704896..1705951 (+) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  OS079_RS08570 - 1706121..1706762 (-) 642 WP_000192947.1 YigZ family protein -
  OS079_RS08575 fakB1 1706906..1707772 (+) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  OS079_RS08580 comFA 1708136..1709218 (+) 1083 WP_267837893.1 DEAD/DEAH box helicase Machinery gene
  OS079_RS08585 - 1709211..1709885 (+) 675 Protein_1674 ComF family protein -
  OS079_RS08590 hpf 1709946..1710518 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  OS079_RS08595 secA 1710932..1713463 (+) 2532 WP_089520896.1 preprotein translocase subunit SecA -
  OS079_RS08600 - 1713505..1713609 (+) 105 WP_001790092.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42145.67 Da        Isoelectric Point: 9.8307

>NTDB_id=688170 OS079_RS08580 WP_267837893.1 1708136..1709218(+) (comFA) [Staphylococcus aureus strain Seraphine]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRKRQTILLYAVTGAGKTEMMFQGIQYARIQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKNFQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNKKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=688170 OS079_RS08580 WP_267837893.1 1708136..1709218(+) (comFA) [Staphylococcus aureus strain Seraphine]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGACAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAATTTTCAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAAGAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGGGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAG
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.643

94.167

0.364