Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   M3Y14_RS09700 Genome accession   NZ_CP097257
Coordinates   1869072..1869359 (+) Length   95 a.a.
NCBI ID   WP_000648281.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain Bt Gxmzu777-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1864072..1874359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3Y14_RS09680 (M3Y14_09635) - 1865266..1865465 (+) 200 Protein_1902 DUF4083 domain-containing protein -
  M3Y14_RS09685 (M3Y14_09640) - 1865479..1865940 (+) 462 WP_264540609.1 NUDIX hydrolase -
  M3Y14_RS09690 (M3Y14_09645) nadE 1865984..1866802 (-) 819 WP_264540610.1 ammonia-dependent NAD(+) synthetase -
  M3Y14_RS09695 (M3Y14_09650) - 1867073..1868953 (+) 1881 WP_264540611.1 FtsX-like permease family protein -
  M3Y14_RS09700 (M3Y14_09655) abrB 1869072..1869359 (+) 288 WP_000648281.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  M3Y14_RS09705 (M3Y14_09660) - 1869823..1871001 (+) 1179 WP_113710320.1 tyrosine-type recombinase/integrase -
  M3Y14_RS09710 (M3Y14_09665) - 1871031..1873166 (+) 2136 WP_264540612.1 tyrosine-type recombinase/integrase -
  M3Y14_RS09715 (M3Y14_09670) - 1873159..1873554 (+) 396 WP_113710322.1 DUF6262 family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10662.43 Da        Isoelectric Point: 5.8623

>NTDB_id=688154 M3Y14_RS09700 WP_000648281.1 1869072..1869359(+) (abrB) [Bacillus thuringiensis strain Bt Gxmzu777-1]
MKATGIIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSDQNISLANGNITVSIEGAK
HVIKEIEQFLKKSEI

Nucleotide


Download         Length: 288 bp        

>NTDB_id=688154 M3Y14_RS09700 WP_000648281.1 1869072..1869359(+) (abrB) [Bacillus thuringiensis strain Bt Gxmzu777-1]
ATGAAAGCAACAGGAATTATTCGAAAAGTAGATGAATTGGGACGGATAGTTATTCCTAAAGAATTACGAGATGTATTAGG
AATACAAATCAAATCACCACTTGAAATTTTTGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGCGATGTTTCAGATCAAAATATTTCATTAGCAAATGGAAACATTACTGTTAGTATAGAAGGCGCAAAA
CATGTAATAAAAGAAATTGAGCAGTTTTTGAAAAAGAGTGAGATTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

57.143

95.789

0.547