Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   M3Y14_RS07620 Genome accession   NZ_CP097257
Coordinates   1463861..1464463 (-) Length   200 a.a.
NCBI ID   WP_002030800.1    Uniprot ID   A0A366GKC2
Organism   Bacillus thuringiensis strain Bt Gxmzu777-1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1458861..1469463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3Y14_RS07600 (M3Y14_07575) dnaD 1459174..1459881 (+) 708 WP_000728546.1 DNA replication protein DnaD -
  M3Y14_RS07605 (M3Y14_07580) nth 1459897..1460544 (+) 648 WP_000933020.1 endonuclease III -
  M3Y14_RS07610 (M3Y14_07585) - 1460548..1461066 (+) 519 WP_219917763.1 YpoC family protein -
  M3Y14_RS07615 (M3Y14_07590) - 1461092..1463794 (-) 2703 WP_264540463.1 PBP1A family penicillin-binding protein -
  M3Y14_RS07620 (M3Y14_07595) recU 1463861..1464463 (-) 603 WP_002030800.1 Holliday junction resolvase RecU Machinery gene
  M3Y14_RS07625 (M3Y14_07600) - 1464567..1465592 (+) 1026 WP_219917765.1 DUF2515 domain-containing protein -
  M3Y14_RS35140 - 1465938..1466084 (-) 147 WP_307838389.1 phage portal protein -
  M3Y14_RS07630 (M3Y14_07605) - 1466203..1466445 (+) 243 WP_219917766.1 hypothetical protein -
  M3Y14_RS07635 (M3Y14_07610) - 1466463..1466807 (+) 345 WP_002149288.1 YppE family protein -
  M3Y14_RS07640 (M3Y14_07615) - 1466985..1467176 (-) 192 WP_219917768.1 YppF family protein -
  M3Y14_RS07645 (M3Y14_07620) - 1467354..1468088 (+) 735 WP_264540464.1 YppG family protein -
  M3Y14_RS07650 (M3Y14_07625) - 1468246..1468659 (+) 414 WP_219917770.1 CotD family spore coat protein -
  M3Y14_RS07655 (M3Y14_07630) - 1468716..1469270 (+) 555 WP_219917771.1 DUF1273 domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23347.59 Da        Isoelectric Point: 9.5601

>NTDB_id=688153 M3Y14_RS07620 WP_002030800.1 1463861..1464463(-) (recU) [Bacillus thuringiensis strain Bt Gxmzu777-1]
MTIRYPNGKRYDQASQPHKTPIKKHTYSNRGMSLEEELNDTNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKQEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=688153 M3Y14_RS07620 WP_002030800.1 1463861..1464463(-) (recU) [Bacillus thuringiensis strain Bt Gxmzu777-1]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACGATCAAGCTTCACAACCTCATAAAACACCAATAAAAAAACATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGACACCAATCAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTC
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAAGAAACTAAAAATAA
AACCAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAGTAGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGTAAATCGATTACAAAACAAGAAATAGAAGAGCATGGGTCTTTATTATCATGCGGTTATCACCCTCG
CATTGATTATATCCGCGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GKC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625