Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   M3Y14_RS06250 Genome accession   NZ_CP097257
Coordinates   1210778..1211101 (-) Length   107 a.a.
NCBI ID   WP_002064339.1    Uniprot ID   J8AHG1
Organism   Bacillus thuringiensis strain Bt Gxmzu777-1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1205778..1216101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3Y14_RS06225 (M3Y14_06200) - 1205941..1207227 (+) 1287 WP_264540362.1 D-alanyl-D-alanine carboxypeptidase family protein -
  M3Y14_RS06230 (M3Y14_06205) sipW 1207429..1207998 (+) 570 WP_002064334.1 signal peptidase I SipW -
  M3Y14_RS06235 (M3Y14_06210) - 1208063..1208650 (+) 588 WP_219917542.1 CalY family protein -
  M3Y14_RS06240 (M3Y14_06215) - 1208813..1209696 (+) 884 Protein_1213 DUF4047 domain-containing protein -
  M3Y14_RS06245 (M3Y14_06220) calY 1210103..1210696 (+) 594 WP_219917544.1 biofilm matrix protein CalY -
  M3Y14_RS06250 (M3Y14_06225) sinR 1210778..1211101 (-) 324 WP_002064339.1 helix-turn-helix domain-containing protein Regulator
  M3Y14_RS06255 (M3Y14_06230) - 1211182..1211316 (-) 135 WP_000276220.1 anti-repressor SinI family protein -
  M3Y14_RS06260 (M3Y14_06235) inhA1 1211658..1214048 (+) 2391 WP_219917545.1 M6 family metalloprotease immune inhibitor InhA1 -
  M3Y14_RS06265 (M3Y14_06240) - 1214220..1215587 (+) 1368 WP_264540363.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12320.06 Da        Isoelectric Point: 7.2050

>NTDB_id=688151 M3Y14_RS06250 WP_002064339.1 1210778..1211101(-) (sinR) [Bacillus thuringiensis strain Bt Gxmzu777-1]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKISAVLQIPVDTLLHDETTTESHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTQWKKNQQ

Nucleotide


Download         Length: 324 bp        

>NTDB_id=688151 M3Y14_RS06250 WP_002064339.1 1210778..1211101(-) (sinR) [Bacillus thuringiensis strain Bt Gxmzu777-1]
ATGATAGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGCATTTCACTAACAGAACTCGCAGAAAAAGCTGGTGTAGC
TAAATCTTACATTAGTTCTATAGAACGGAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATTTCAGCTGTTC
TACAAATTCCAGTTGATACTTTACTTCACGATGAAACAACAACAGAAAGTCATCTAGACTCCGAATGGACGCAACTCGTT
AAAGATGCGATGAGCTCCGGTGTCTCAAAAGAACAGTTTCGTGAATTTCTCGAATTTACACAATGGAAGAAAAATCAACA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8AHG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692