Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   M4954_RS23895 Genome accession   NZ_CP097256
Coordinates   5143503..5144060 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain D5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5138503..5149060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4954_RS23875 (M4954_23875) pilR 5139779..5141116 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  M4954_RS23880 (M4954_23880) thiO 5141162..5142256 (-) 1095 WP_031671383.1 glycine oxidase ThiO -
  M4954_RS23885 (M4954_23885) - 5142391..5142900 (+) 510 WP_058143501.1 Tfp pilus assembly protein FimT/FimU -
  M4954_RS23890 (M4954_23890) - 5143006..5143512 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  M4954_RS23895 (M4954_23895) pilV 5143503..5144060 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  M4954_RS23900 (M4954_23900) pilW 5144057..5144881 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  M4954_RS23905 (M4954_23905) pilX 5144878..5145465 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  M4954_RS23910 (M4954_23910) pilY1 5145477..5148968 (+) 3492 WP_124202170.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=688124 M4954_RS23895 WP_003119423.1 5143503..5144060(+) (pilV) [Pseudomonas aeruginosa strain D5]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=688124 M4954_RS23895 WP_003119423.1 5143503..5144060(+) (pilV) [Pseudomonas aeruginosa strain D5]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995