Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   OS086_RS13245 Genome accession   NZ_CP113039
Coordinates   2658458..2659084 (+) Length   208 a.a.
NCBI ID   WP_108720517.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Gwen     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2653458..2664084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS086_RS13210 - 2654442..2654774 (-) 333 WP_000516798.1 DUF4889 domain-containing protein -
  OS086_RS13215 - 2654858..2656003 (-) 1146 WP_000487154.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  OS086_RS13225 gpsB 2656654..2656998 (-) 345 WP_001286320.1 cell division regulator GpsB -
  OS086_RS13230 - 2657012..2657575 (-) 564 WP_000241308.1 DUF1273 domain-containing protein -
  OS086_RS13235 - 2657568..2657918 (-) 351 WP_001000806.1 YppE family protein -
  OS086_RS13240 - 2657973..2658152 (-) 180 WP_001788819.1 hypothetical protein -
  OS086_RS13245 recU 2658458..2659084 (+) 627 WP_108720517.1 Holliday junction resolvase RecU Machinery gene
  OS086_RS13250 - 2659081..2661264 (+) 2184 WP_126787860.1 transglycosylase domain-containing protein -
  OS086_RS13255 - 2661830..2662171 (-) 342 WP_000182021.1 YpoC family protein -
  OS086_RS13260 nth 2662176..2662835 (-) 660 WP_000253765.1 endonuclease III -
  OS086_RS13265 - 2662825..2663511 (-) 687 WP_000362218.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24471.87 Da        Isoelectric Point: 9.7084

>NTDB_id=688121 OS086_RS13245 WP_108720517.1 2658458..2659084(+) (recU) [Staphylococcus aureus strain Gwen]
MNYPNGKPYRKNSAIDGGKKTAVFSNIEYGGRGMSLEKDIEHSNTFYLKSDIAVIHKKPTPVQIVNVNYPKRSKAVINEA
YFRTPSTTDYNGVYQGYYIDFEAKETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFEVFWK
RYKDNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRV

Nucleotide


Download         Length: 627 bp        

>NTDB_id=688121 OS086_RS13245 WP_108720517.1 2658458..2659084(+) (recU) [Staphylococcus aureus strain Gwen]
ATGAATTATCCAAATGGTAAACCATATCGTAAAAATAGTGCTATAGACGGAGGGAAAAAGACCGCTGTCTTTAGTAATAT
TGAGTATGGTGGACGTGGTATGTCACTTGAAAAAGATATCGAACATTCAAATACGTTTTATCTTAAAAGCGACATTGCAG
TTATTCACAAAAAGCCTACGCCAGTACAAATAGTTAATGTCAACTATCCTAAGCGGAGTAAAGCTGTGATTAACGAAGCT
TATTTTCGTACACCTTCAACAACTGATTACAACGGCGTTTATCAAGGTTATTATATTGATTTTGAAGCAAAGGAAACTAA
AAACAAGACGTCCTTTCCTTTAAATAATATTCATGACCATCAAGTCGAACATATGAAAAATGCATATCAACAAAAAGGTA
TTGTGTTTTTAATGATTCGTTTTAAAACGCTAGATGAAGTTTATCTTTTACCCTATTCAAAATTCGAAGTATTTTGGAAG
AGATATAAAGATAATATTAAAAAGTCTATAACAGTTGATGAAATACGAAAAAATGGTTACCATATTCCTTATCAGTATCA
ACCAAGATTAGACTATCTAAAAGCAGTTGATAAGTTGATATTAGATGAAAGTGAGGACCGCGTATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

53.14

99.519

0.529