Detailed information NTG0068799

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: PDPUS_RS02795
• Genome accession: NZ_AP018045
• Coordinates: 576944..580336 (-)
• Length: 1130 a.a.
• NCBI ID: WP_086957548.1
• Uniprot ID: L7NKG1
• Organism: Photobacterium damselae subsp. piscicida strain 91-197
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 571944..585336

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PDPUS_RS02780 (PDPUS_1_00530)	-	572406..573431 (-)	1026	WP_044176763.1	ABC transporter permease	-
PDPUS_RS02785 (PDPUS_1_00531)	-	573434..574420 (-)	987	WP_044176762.1	ABC transporter permease	-
PDPUS_RS02790 (PDPUS_1_00532)	-	574567..576243 (-)	1677	WP_086957547.1	ABC transporter substrate-binding protein	-
PDPUS_RS02795 (PDPUS_1_00533)	chiS	576944..580336 (-)	3393	WP_086957548.1	response regulator	Regulator
PDPUS_RS02800 (PDPUS_1_00534)	rsmC	580650..581669 (-)	1020	WP_044176758.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
PDPUS_RS02805 (PDPUS_1_00535)	-	581869..582957 (-)	1089	WP_086957549.1	AI-2E family transporter	-
PDPUS_RS02810 (PDPUS_1_00536)	hemL	583331..584623 (-)	1293	WP_005301305.1	glutamate-1-semialdehyde 2,1-aminomutase	-

Sequence

Protein

• Length: 1130 a.a.
• Molecular weight: 127207.32 Da
• Isoelectric Point: 6.6791

>NTDB_id=68799 PDPUS_RS02795 WP_086957548.1 576944..580336(-) (chiS) [Photobacterium damselae subsp. piscicida strain 91-197]
MQTKQRFKRLQHTLMLAFLVLSITPLTLSALYFLNSHSKDLAEQSTSHLASLLENKKKQLNQFFAAKESEVQSFARSELA
NASGGRFYGLVGAYHQLGNINNLLNGLTRDQYFKEILTAKGQKSTTNSASYVGQERYRLMYKRYNWAFDEYLKRSDFSDI
LLVDLKGNVVYSAKKPQYFALNLASGKGALKGLQPTFQAISTQAQQLKQDQEVVPVAFADFNLGGNNQSEQAWFAAPIIQ
QGYLHSYVFFQLDINKIATLLPDKPQNGQTVQTLLVGQDHHMRLPNSGDLPQQLISPAINQALAGKTGVGSLLNYNNIAV
LSAFTPIKIFNHTWALVVELPEKEAFARIHQLEKIFFAAMLTAIVLVILAALWLSNSITAPLLRLTWASERVSAGDLEQK
IEGTERKDEIGRLATSFARMQCSIREKMSLISKQNQELEKNIHVIKQQNDDLQTADKLKDEFLATTSHELRTPLHGMIGI
AESLLAGANGPMQGAQRRQLEMLINSGQRLTNLVDDLLDYHKMRYGDLDIDKHAVDLASAVRLVLELSGHLLGTKPVRII
NQIPADLPLVQADEQRLEQVLYNLVGNAIKYTSEGKIVLSATVLENQVRIQVVDTGQGIPAEQLEHIFEPLVQANTNHAN
YRQGAGLGLTISRQLLELMGGRLYVSSQPMVGTTFSFTLNIASDEQIRQSHDHGKIHHFQAPLCDATPIEMANLPENLNG
ELLLVVDDEPVNLQILNNFLRLEGYRVLTAESGKQALELVQSHKPALILLDIMMPEMSGYEVCSQLRQQYTPLELPIMML
SALGQVKDRVKGFECGANDYLTKPFNKEELTARIKAHLQAGKTEFEREKNRQLAQEIHQRKQVELSLLETQTRLLGLLES
TTEAILCIQNSGRIRYANDAAAKLFKRTPEQLERHSIDELLLTHLPDELQNNHHYSGSLCFKIGEQQQNLATDILNLPEE
SGLKQMFIFGNSGPSPQQRVQMLEEAIDVLSSYAFDGDKDNLQQLRELGGEFTRLADKLGNDAPNKQDILRELLVDAMRT
TLEVWEQDTKKTKFDLAEESGLWRVYLDRSTLQTRTLDKYLHVETLPKTPRWRTVISTIDYVLDKGSAQNIQHQQLSQMR
DKLQNLLRAS

Nucleotide

• Length: 3393 bp

>NTDB_id=68799 PDPUS_RS02795 WP_086957548.1 576944..580336(-) (chiS) [Photobacterium damselae subsp. piscicida strain 91-197]
ATGCAAACAAAACAACGATTTAAACGTCTTCAGCATACATTAATGCTGGCTTTTCTTGTTCTTAGTATTACGCCATTAAC
TCTCTCCGCACTGTATTTCCTCAACTCACACTCCAAGGATTTGGCAGAGCAAAGCACATCGCATTTGGCGTCTCTTCTTG
AGAATAAGAAAAAACAACTAAACCAATTTTTTGCGGCTAAAGAGTCTGAGGTGCAAAGTTTTGCTCGATCAGAGCTTGCT
AATGCCAGTGGTGGCCGCTTCTATGGGTTAGTAGGGGCTTACCATCAATTAGGTAATATCAATAACCTGTTAAATGGCCT
GACGCGAGACCAGTATTTTAAAGAGATTCTCACGGCAAAAGGGCAAAAAAGTACCACCAACAGTGCCAGTTATGTCGGCC
AGGAGCGCTATCGTTTAATGTATAAGCGTTATAACTGGGCATTTGATGAATATCTTAAGCGCTCAGATTTTAGTGATATC
TTATTGGTTGATTTAAAAGGTAATGTGGTCTATTCCGCGAAAAAACCACAGTACTTTGCTTTAAATCTTGCTTCAGGCAA
GGGAGCCTTAAAAGGGTTACAACCAACTTTCCAAGCCATTAGCACTCAAGCTCAACAGCTAAAACAAGACCAAGAAGTCG
TACCCGTTGCTTTTGCCGATTTTAACCTAGGAGGCAATAATCAGTCAGAACAAGCCTGGTTTGCCGCCCCAATCATTCAG
CAAGGGTATTTACACAGCTACGTATTTTTCCAGCTCGATATCAATAAAATCGCAACCTTACTGCCCGATAAACCGCAAAA
TGGGCAAACGGTTCAAACTCTATTAGTAGGCCAAGATCATCACATGCGCTTACCCAATAGTGGAGATTTGCCACAACAAT
TGATCAGCCCAGCCATCAACCAAGCACTTGCAGGCAAAACTGGGGTAGGCAGTTTGCTTAACTACAATAATATTGCCGTA
CTCAGTGCCTTTACTCCGATTAAAATCTTTAACCACACCTGGGCATTGGTAGTTGAATTACCCGAAAAAGAAGCATTTGC
TCGTATTCATCAACTCGAAAAAATCTTTTTTGCAGCCATGCTTACTGCCATCGTATTAGTGATTTTAGCCGCTCTTTGGT
TATCAAACTCAATAACGGCTCCCCTATTACGCTTAACTTGGGCATCTGAGCGAGTCTCAGCAGGCGATCTAGAACAAAAA
ATCGAAGGAACAGAACGTAAAGATGAAATTGGTCGTCTTGCCACTAGCTTTGCTCGAATGCAATGTTCTATTCGGGAAAA
AATGAGTTTAATTAGCAAGCAAAATCAAGAGCTTGAAAAAAACATTCACGTAATCAAACAACAAAATGATGATCTACAAA
CCGCCGACAAACTAAAAGATGAGTTCTTAGCGACGACTTCACATGAGTTGCGAACCCCTCTTCACGGGATGATTGGGATA
GCCGAATCCTTACTTGCTGGAGCAAATGGACCAATGCAAGGAGCCCAACGCCGTCAATTGGAAATGTTGATCAACAGTGG
TCAGCGTCTAACGAACTTAGTTGATGATCTACTCGATTACCACAAAATGCGTTATGGCGATCTCGATATCGATAAACATG
CGGTCGATCTTGCCAGCGCTGTTCGGTTAGTTCTTGAATTATCTGGCCATTTATTGGGAACCAAACCGGTTCGAATCATT
AACCAAATACCCGCTGATTTACCTTTAGTTCAAGCCGATGAACAACGCCTAGAGCAAGTGCTGTATAACTTGGTTGGTAA
TGCAATCAAATATACCTCTGAAGGAAAGATTGTGCTTTCTGCAACAGTATTGGAAAACCAAGTTCGCATTCAAGTGGTTG
ATACAGGACAAGGAATTCCGGCAGAACAACTTGAACATATCTTTGAACCACTGGTACAAGCCAACACCAATCATGCTAAC
TATCGTCAAGGAGCGGGCCTTGGTTTAACCATTAGCCGTCAATTACTGGAGTTAATGGGTGGTCGCCTGTACGTCAGCAG
TCAGCCAATGGTGGGAACCACTTTTAGTTTTACCCTAAACATCGCCTCCGACGAACAAATTCGCCAAAGCCATGATCACG
GTAAAATTCATCACTTCCAAGCTCCATTGTGTGATGCCACTCCGATTGAAATGGCAAATTTACCTGAAAACTTAAATGGT
GAACTACTACTCGTGGTTGATGATGAACCCGTTAATCTTCAGATACTCAATAACTTCCTAAGACTTGAAGGGTATCGAGT
TCTCACAGCAGAAAGCGGAAAACAGGCCCTTGAGTTAGTACAAAGCCACAAACCCGCACTGATTTTACTCGATATTATGA
TGCCAGAAATGAGTGGTTATGAGGTTTGTAGCCAATTGCGCCAACAATATACCCCATTAGAACTACCGATCATGATGCTA
TCTGCATTGGGGCAAGTTAAAGATCGCGTTAAAGGTTTTGAATGCGGCGCCAATGATTACCTAACAAAACCTTTTAATAA
AGAAGAGCTTACCGCACGTATAAAAGCCCATCTTCAAGCGGGAAAAACTGAATTTGAGCGAGAAAAAAATCGTCAATTAG
CTCAAGAAATTCACCAACGTAAGCAAGTTGAGTTAAGTTTACTTGAGACCCAAACTCGATTACTTGGCCTATTAGAATCC
ACCACCGAAGCCATTTTATGTATTCAAAATAGTGGGCGAATTCGTTATGCCAATGACGCTGCGGCTAAATTATTTAAACG
CACTCCAGAGCAATTGGAGCGCCACTCCATCGATGAACTACTGCTAACCCACCTACCTGATGAGTTACAAAATAATCATC
ATTACAGTGGTTCACTGTGTTTCAAAATTGGCGAACAACAACAAAACCTTGCTACCGATATCCTCAATTTGCCAGAAGAG
TCTGGACTTAAGCAGATGTTTATCTTCGGCAATAGCGGGCCATCGCCACAGCAACGAGTACAAATGCTTGAAGAAGCTAT
TGATGTTTTATCGAGCTATGCTTTTGATGGTGACAAAGACAACTTACAACAATTGCGTGAGCTAGGTGGAGAATTCACCA
GACTGGCAGACAAATTGGGTAATGATGCCCCTAATAAACAAGATATTTTGCGCGAATTGCTGGTTGATGCCATGCGTACA
ACGCTTGAGGTTTGGGAGCAAGATACGAAAAAAACCAAGTTTGATTTAGCCGAAGAGAGTGGATTATGGCGTGTTTATCT
CGATCGTAGTACGCTACAAACTCGCACCTTAGATAAATATCTCCATGTTGAGACTCTTCCTAAAACGCCACGTTGGCGCA
CGGTTATTAGCACCATAGACTATGTTCTTGATAAAGGCAGTGCTCAAAATATCCAACATCAACAGCTGAGCCAGATGCGA
GATAAATTGCAGAACTTATTACGAGCAAGTTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (724-835)

• His Kinase A (phospho-acceptor) domain (HisKA) (459-524)

• HAMP domain (HAMP) (373-421)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (573-680)

3D structure

• AlphaFold DB: L7NKG1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	58.761	100	0.588