Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpE   Type   Regulator
Locus tag   OS091_RS03115 Genome accession   NZ_CP113037
Coordinates   604142..606250 (-) Length   702 a.a.
NCBI ID   WP_001063329.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Zilean     
Function   repress competence development (at the early growth phase) (predicted from homology)   
Competence regulation

Genomic Context


Location: 599142..611250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS091_RS03100 - 601658..601885 (+) 228 WP_000932073.1 FeoA family protein -
  OS091_RS03105 feoB 601897..603891 (+) 1995 WP_000432888.1 ferrous iron transport protein B -
  OS091_RS03110 - 603904..604074 (+) 171 WP_000111116.1 FeoB-associated Cys-rich membrane protein -
  OS091_RS03115 clpE 604142..606250 (-) 2109 WP_001063329.1 ATP-dependent Clp protease ATP-binding subunit ClpL Regulator
  OS091_RS03120 - 606613..607134 (+) 522 WP_000262593.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  OS091_RS03125 sey 607335..608000 (+) 666 WP_000644943.1 staphylococcal enterotoxin type Y -
  OS091_RS03130 - 608229..609395 (-) 1167 WP_000151980.1 hydroxymethylglutaryl-CoA synthase -
  OS091_RS03135 - 609650..610930 (+) 1281 WP_001191008.1 hydroxymethylglutaryl-CoA reductase, degradative -

Sequence


Protein


Download         Length: 702 a.a.        Molecular weight: 78094.64 Da        Isoelectric Point: 4.6626

>NTDB_id=687965 OS091_RS03115 WP_001063329.1 604142..606250(-) (clpE) [Staphylococcus aureus strain Zilean]
MNNNFFNSDFDSILRRMMQDMQNSNQTSNKKYYINGKEVSPEELAQFTQQGGNHSAEQSAQAFQQAALRQQGQQSGNGNY
LEQIGRNLTQEARDGLLDPVIGRDKEIQETAEVLSRRTKNNPILVGEAGVGKTAIVEGLAQAIVEGNVPAAIKDKEIISI
DISSLEAGTQYRGAFEENIQKLVEGVKSSQNAVLFFDEIHQIIGSGATGSDSGSKGLSDILKPALSRGEISIIGATTQDE
YRNNIMKDAALTRRFNEVLVNEPSAKDTVEILKGIREKFETHHQVKLPDDVLKACVDLSIQYIPQRLLPDKAIDVLDITA
AHLSAQSPAIDKVATEKRISELEHDKRKAVSAEEYKKADDIQNEIKSLQDILENSNGEHTAVATVHDISDTIQRLTGIPV
SQMDANDIERLKNISSRLRSKIIGQDKAVEMVSRAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLAIDLFGNKEA
LIRLDMSEYSDTTAVSKMIGTTAGYVGYDDNSNTLTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVI
NFKNTIIICTSNAGFGNGTDQEYDDIMQEMKKFFRPEFLNRFNGIVEFLHLDKESLQEIINLLLDDVQVTLDKKGITMNV
SQDAKDWLIEEGYDEDLGARPLRRIVEQQVRDKITDYYLDHTDVKHVDLDIEDNELVVKGKS

Nucleotide


Download         Length: 2109 bp        

>NTDB_id=687965 OS091_RS03115 WP_001063329.1 604142..606250(-) (clpE) [Staphylococcus aureus strain Zilean]
ATGAATAACAATTTTTTCAATAGTGACTTCGATTCTATTTTACGAAGAATGATGCAAGACATGCAAAACTCAAATCAGAC
TAGTAACAAGAAATACTATATTAATGGTAAAGAAGTTTCACCGGAAGAATTAGCACAATTTACGCAACAAGGTGGTAATC
ATTCTGCCGAACAAAGTGCGCAAGCTTTTCAACAAGCAGCACTAAGACAACAAGGTCAACAAAGTGGCAATGGCAATTAT
TTAGAACAAATTGGTCGTAACTTAACGCAAGAGGCTCGTGACGGATTATTAGATCCAGTCATCGGTCGTGATAAAGAAAT
CCAAGAAACTGCAGAAGTCTTAAGTAGACGCACTAAAAACAATCCTATCCTAGTCGGAGAAGCTGGAGTTGGTAAAACTG
CGATTGTCGAAGGTTTAGCGCAAGCAATCGTTGAAGGGAACGTACCTGCAGCAATCAAAGATAAAGAAATTATATCTATA
GATATTTCATCGCTTGAAGCTGGAACGCAATATCGTGGCGCCTTTGAAGAAAACATCCAAAAGTTAGTTGAAGGCGTTAA
GTCATCACAAAATGCTGTGCTCTTCTTTGACGAAATTCACCAAATCATCGGTTCCGGCGCAACAGGAAGTGATTCCGGTA
GTAAAGGGTTATCTGATATTTTAAAACCAGCATTAAGTCGTGGTGAAATTTCAATTATAGGTGCAACGACTCAAGATGAA
TATCGAAACAATATCATGAAAGACGCTGCATTAACACGTCGTTTTAACGAGGTGCTGGTTAACGAACCAAGCGCAAAAGA
TACGGTTGAAATTTTAAAAGGAATTCGCGAAAAATTTGAAACACACCATCAAGTCAAATTACCTGATGACGTATTAAAGG
CATGTGTAGACTTATCCATTCAATATATTCCACAACGCTTATTACCTGACAAAGCAATCGATGTATTAGATATTACAGCT
GCACATTTATCTGCACAAAGCCCTGCTATTGATAAAGTCGCGACTGAAAAACGTATTTCTGAATTGGAACATGATAAGCG
TAAAGCTGTAAGTGCTGAAGAATATAAAAAAGCAGATGACATTCAAAATGAAATCAAATCTCTACAAGATATATTAGAAA
ACAGTAATGGTGAACATACTGCAGTAGCAACGGTGCATGATATTTCTGATACCATTCAACGATTAACTGGTATTCCTGTA
TCTCAAATGGATGCCAATGACATTGAACGTTTAAAAAATATTTCTAGTCGTTTAAGAAGTAAAATCATTGGTCAAGATAA
AGCTGTAGAAATGGTTTCTCGTGCCATTCGTCGTAATCGAGCTGGTTTTGATGATGGCAATCGTCCAATTGGTAGCTTCC
TATTTGTCGGTCCTACTGGTGTTGGTAAAACAGAGCTTGCCAAACAGTTAGCCATTGATTTATTTGGTAATAAAGAGGCA
CTGATTCGACTTGATATGAGTGAATATAGTGATACTACTGCTGTTTCTAAAATGATTGGTACAACTGCTGGCTATGTCGG
TTATGACGATAATTCAAATACATTAACTGAAAAAGTACGACGCAATCCATATTCAGTCATTCTATTTGATGAAATTGAAA
AGGCTAATCCACAAATATTAACATTATTACTCCAAGTGATGGATGATGGTAATTTAACAGATGGTCAAGGTAACGTCATC
AACTTTAAAAACACAATCATTATTTGTACGTCAAACGCTGGTTTTGGTAACGGTACAGACCAAGAATACGATGACATTAT
GCAAGAAATGAAAAAATTCTTCCGTCCTGAATTCCTTAACCGCTTCAATGGTATTGTAGAATTCTTACACCTAGATAAAG
AGTCACTACAAGAAATCATTAATTTATTGTTGGATGATGTCCAAGTAACATTAGATAAAAAAGGTATTACGATGAATGTC
TCTCAAGATGCAAAAGATTGGTTAATTGAAGAAGGTTATGATGAAGACTTAGGCGCACGCCCATTAAGACGTATTGTTGA
ACAACAAGTGCGTGACAAAATAACAGATTATTATTTAGATCATACAGACGTTAAACATGTGGATTTAGATATCGAAGACA
ATGAGTTAGTCGTCAAAGGTAAATCATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus mutans UA159

47.745

91.595

0.437

  clpC Lactococcus lactis subsp. cremoris KW2

46.203

90.028

0.416

  clpE Streptococcus pneumoniae Rx1

46.992

87.607

0.412

  clpE Streptococcus pneumoniae D39

46.992

87.607

0.412

  clpE Streptococcus pneumoniae R6

46.992

87.607

0.412

  clpE Streptococcus pneumoniae TIGR4

46.992

87.607

0.412

  clpC Bacillus subtilis subsp. subtilis str. 168

43.884

93.162

0.409

  clpC Streptococcus thermophilus LMD-9

44.64

89.031

0.397

  clpC Streptococcus thermophilus LMG 18311

44.48

89.031

0.396

  clpC Streptococcus pneumoniae TIGR4

43.45

89.174

0.387

  clpC Streptococcus pneumoniae D39

43.619

88.177

0.385

  clpC Streptococcus pneumoniae Rx1

43.619

88.177

0.385

  clpC Streptococcus mutans UA159

43.577

87.607

0.382

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

41.894

88.746

0.372