Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   MLL77_RS18185 Genome accession   NZ_CP097209
Coordinates   3949371..3950810 (-) Length   479 a.a.
NCBI ID   WP_039040474.1    Uniprot ID   -
Organism   Aeromonas caviae strain W3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3944371..3955810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MLL77_RS18155 (MLL77_18120) - 3944650..3945390 (+) 741 WP_182976118.1 KDGP aldolase family protein -
  MLL77_RS18160 (MLL77_18125) - 3945494..3947398 (+) 1905 WP_182976119.1 HTH domain-containing protein -
  MLL77_RS18165 (MLL77_18130) npr 3947414..3947686 (-) 273 WP_010675868.1 PTS phosphocarrier protein NPr -
  MLL77_RS18170 (MLL77_18135) rapZ 3947707..3948573 (-) 867 WP_010675869.1 RNase adapter RapZ -
  MLL77_RS18175 (MLL77_18140) ptsN 3948614..3949060 (-) 447 WP_010675870.1 PTS IIA-like nitrogen regulatory protein PtsN -
  MLL77_RS18180 (MLL77_18145) hpf 3949063..3949350 (-) 288 WP_005305957.1 ribosome hibernation promoting factor -
  MLL77_RS18185 (MLL77_18150) rpoN/rpoN1 3949371..3950810 (-) 1440 WP_039040474.1 RNA polymerase factor sigma-54 Machinery gene
  MLL77_RS18190 (MLL77_18155) lptB 3950876..3951601 (-) 726 WP_010675872.1 LPS export ABC transporter ATP-binding protein -
  MLL77_RS18195 (MLL77_18160) lptA 3951614..3952132 (-) 519 WP_010675873.1 lipopolysaccharide transport periplasmic protein LptA -
  MLL77_RS18200 (MLL77_18165) lptC 3952119..3952679 (-) 561 WP_039040473.1 LPS export ABC transporter periplasmic protein LptC -
  MLL77_RS18205 (MLL77_18170) kdsC 3952676..3953230 (-) 555 WP_042864828.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  MLL77_RS18210 (MLL77_18175) - 3953230..3954225 (-) 996 WP_029314845.1 KpsF/GutQ family sugar-phosphate isomerase -
  MLL77_RS18215 (MLL77_18180) mlaF 3954432..3955232 (+) 801 WP_029314846.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53761.57 Da        Isoelectric Point: 4.3728

>NTDB_id=687838 MLL77_RS18185 WP_039040474.1 3949371..3950810(-) (rpoN/rpoN1) [Aeromonas caviae strain W3]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEAQETSQTETQDASQLDSSDAMAQESMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTATLED
IQAAVSSEEVEVELDEIEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLDEAREVIREHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSESQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNEAYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=687838 MLL77_RS18185 WP_039040474.1 3949371..3950810(-) (rpoN/rpoN1) [Aeromonas caviae strain W3]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCTTTGCTGGAGCAAGAGGAGAACGAGG
CGCAGGAAACCAGTCAGACAGAGACACAGGACGCCAGTCAACTCGACTCCAGCGATGCCATGGCCCAGGAGAGCATGCCG
GATGAACTGCCGGTGGACACCACCTGGGACGAGGTCTACTCGGCCGGTACGGCCCAGAGTGCAGGCCCCATCCATGACGG
GGAAGACAGCGTCTATCAGGGGGAGACCACCGAGAATCTGCAGGACTACCTGCTGTGGCAGATGCGGCTCACCCCGTTCA
GTGATGTGGATGCTGCCATCGCGCTTGCCATCATCGATGCCATCGACGAATCCGGGTATCTGACTGCCACCCTCGAGGAT
ATTCAGGCTGCAGTCAGCAGCGAGGAGGTAGAAGTCGAACTGGATGAGATAGAAGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGTTCGGTGCAAGAGTGTCTGCTGATCCAGCTCGGCCAGTATTCGCCGGACCTGCCCT
GGCTCGACGAAGCCAGAGAGGTGATCCGCGAACACATGGACCTGCTCGGCAATCGCGACTACCGCACCCTGGCTCGCAAG
ACCCGCCTCAAGGAGAGCGATCTCAAGGAGGTGCTGGATCTCATCCAGCAACTAGAGCCCAGACCCGGCAACGGCATCAT
CCAGAGTGAATCCCAGTACGTGATCCCGGATGTGTCCGTGGTCAAGAAGGGTAGCAAGTGGGTGGTTGAACTCAATCCGG
ATTCTGCTCCGCGCATCCGTGTCAACGAGGCCTATGCGGCCATGGCGCGCAATGCCCGCAGCAGCACGGATACCCAGTTC
ATCCGTTCTCATTTGCAGGAGGCCAAGTGGTTCATCAAGAGCCTGGAGAGTCGTAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTTTTCGAGTACGGCGAAGAGGCCATGAAACCCATGGTACTCAACGACATCGCGG
AAGCGGTGGAGATGCATGAGTCGACCATTTCACGGGTCACGACCCAGAAGTACATGCATACGCCCCGCGGCATTTTTGAA
CTGAAGTTTTTTTTCTCCAGTCACGTCAATACGGAGGGAGGAGGAGAGTGCTCATCGACCGCTATTCGCGCCCTGATCAA
GAAGCTGGTGACGGCGGAAAACCCCGCCAAGCCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.472

100

0.482