Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   M2893_RS08605 Genome accession   NZ_CP097208
Coordinates   1708505..1709284 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain N3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1703505..1714284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2893_RS08585 (M2893_08585) trmFO 1704192..1705499 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  M2893_RS08590 (M2893_08590) xerC 1705569..1706486 (+) 918 WP_043867088.1 tyrosine recombinase XerC -
  M2893_RS08595 (M2893_08595) hslV 1706502..1707047 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  M2893_RS08600 (M2893_08600) hslU 1707055..1708467 (+) 1413 WP_254900101.1 HslU--HslV peptidase ATPase subunit -
  M2893_RS08605 (M2893_08605) codY 1708505..1709284 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  M2893_RS08610 (M2893_08610) flgB 1709638..1710027 (+) 390 WP_063174820.1 flagellar basal body rod protein FlgB -
  M2893_RS08615 (M2893_08615) flgC 1710027..1710479 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  M2893_RS08620 (M2893_08620) fliE 1710490..1710810 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  M2893_RS08625 (M2893_08625) fliF 1710853..1712463 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  M2893_RS08630 (M2893_08630) fliG 1712476..1713492 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  M2893_RS08635 (M2893_08635) fliH 1713485..1714240 (+) 756 WP_057080704.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=687773 M2893_RS08605 WP_003154263.1 1708505..1709284(+) (codY) [Bacillus velezensis strain N3]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=687773 M2893_RS08605 WP_003154263.1 1708505..1709284(+) (codY) [Bacillus velezensis strain N3]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCAGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCTCTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471