Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   OS083_RS13845 Genome accession   NZ_CP113027
Coordinates   2669317..2670399 (-) Length   360 a.a.
NCBI ID   WP_000370986.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Syndra     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2664317..2675399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS083_RS13825 - 2664932..2665030 (-) 99 WP_031844945.1 hypothetical protein -
  OS083_RS13830 secA 2665072..2667603 (-) 2532 WP_000506541.1 preprotein translocase subunit SecA -
  OS083_RS13835 hpf 2668017..2668589 (-) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  OS083_RS13840 - 2668650..2669324 (-) 675 WP_001057968.1 ComF family protein -
  OS083_RS13845 comFA 2669317..2670399 (-) 1083 WP_000370986.1 DEAD/DEAH box helicase Machinery gene
  OS083_RS13850 fakB1 2670763..2671629 (-) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  OS083_RS13855 - 2671773..2672414 (+) 642 WP_000192947.1 YigZ family protein -
  OS083_RS13860 - 2672586..2673641 (-) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  OS083_RS13865 gdpS 2673959..2675029 (+) 1071 WP_000460983.1 GGDEF domain-containing protein GdpS -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42055.60 Da        Isoelectric Point: 9.8309

>NTDB_id=687769 OS083_RS13845 WP_000370986.1 2669317..2670399(-) (comFA) [Staphylococcus aureus strain Syndra]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKHAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINKQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=687769 OS083_RS13845 WP_000370986.1 2669317..2670399(-) (comFA) [Staphylococcus aureus strain Syndra]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGCTCGCAAAGTTCATCGCAAGCATATTATCATCTCTCATTTGAATT
GTCAGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAACACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTTTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAAACAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(214-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367