Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   OS083_RS10240 Genome accession   NZ_CP113027
Coordinates   1931589..1932215 (-) Length   208 a.a.
NCBI ID   WP_001108885.1    Uniprot ID   Q2YY57
Organism   Staphylococcus aureus strain Syndra     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1926589..1937215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS083_RS10220 - 1927211..1927897 (+) 687 WP_000362218.1 DnaD domain-containing protein -
  OS083_RS10225 nth 1927887..1928546 (+) 660 WP_000253769.1 endonuclease III -
  OS083_RS10230 - 1928551..1928892 (+) 342 WP_000182018.1 YpoC family protein -
  OS083_RS10235 - 1929409..1931592 (-) 2184 WP_000138347.1 transglycosylase domain-containing protein -
  OS083_RS10240 recU 1931589..1932215 (-) 627 WP_001108885.1 Holliday junction resolvase RecU Machinery gene
  OS083_RS10245 - 1932521..1932700 (+) 180 WP_001788819.1 hypothetical protein -
  OS083_RS10250 - 1932755..1933105 (+) 351 WP_001000801.1 YppE family protein -
  OS083_RS10255 - 1933098..1933661 (+) 564 WP_000241301.1 DUF1273 domain-containing protein -
  OS083_RS10260 gpsB 1933675..1934019 (+) 345 WP_001286321.1 cell division regulator GpsB -
  OS083_RS10270 - 1934671..1935816 (+) 1146 WP_000487150.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  OS083_RS10275 - 1935900..1936232 (+) 333 WP_000516799.1 DUF4889 domain-containing protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24427.81 Da        Isoelectric Point: 9.7084

>NTDB_id=687739 OS083_RS10240 WP_001108885.1 1931589..1932215(-) (recU) [Staphylococcus aureus strain Syndra]
MNYPNGKPYRKNSAIDGGKKTAAFSNIEYGGRGMSLEKDIEHSNAFYLKSDIAVIHKKPTPVQIVNVNYPKRSKAVINEA
YFRTPSTTDYNGVYQGYYIDFEAKETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFEIFWK
RYKDNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRV

Nucleotide


Download         Length: 627 bp        

>NTDB_id=687739 OS083_RS10240 WP_001108885.1 1931589..1932215(-) (recU) [Staphylococcus aureus strain Syndra]
ATGAATTATCCAAATGGTAAACCATATCGTAAAAATAGTGCTATAGACGGAGGGAAAAAGACCGCTGCCTTTAGTAATAT
TGAGTATGGTGGACGTGGTATGTCACTTGAAAAAGATATCGAACATTCAAATGCGTTTTATCTTAAAAGCGACATTGCAG
TTATTCACAAAAAGCCTACGCCAGTACAAATAGTTAATGTCAACTATCCTAAACGGAGTAAAGCTGTGATTAACGAAGCT
TATTTTCGTACACCTTCAACAACTGATTACAACGGCGTTTATCAAGGTTATTATATTGATTTTGAAGCAAAGGAAACTAA
AAACAAGACGTCCTTTCCTTTAAATAATATTCATGACCATCAAGTCGAACACATGAAAAATGCATATCAACAAAAAGGTA
TTGTGTTTTTAATGATTCGTTTTAAAACGCTAGATGAAGTTTATCTTTTACCCTATTCAAAATTCGAAATATTTTGGAAG
AGATATAAAGATAATATTAAAAAGTCTATAACAGTTGATGAAATACGAAAAAATGGTTACCATATTCCTTATCAGTATCA
ACCAAGATTAGACTATCTAAAAGCAGTTGATAAGTTGATATTAGATGAAAGTGAGGACCGCGTATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YY57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

53.14

99.519

0.529