Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   OS083_RS08130 Genome accession   NZ_CP113027
Coordinates   1522664..1523377 (-) Length   237 a.a.
NCBI ID   WP_001031454.1    Uniprot ID   A0A0H2XG68
Organism   Staphylococcus aureus strain Syndra     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1517664..1528377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS083_RS08095 - 1518682..1519020 (+) 339 Protein_1471 SH3 domain-containing protein -
  OS083_RS08100 - 1519115..1519267 (-) 153 Protein_1472 chemotaxis protein -
  OS083_RS08105 - 1519323..1520360 (-) 1038 WP_000857191.1 tyrosine-type recombinase/integrase -
  OS083_RS08110 - 1520419..1520883 (-) 465 WP_000825947.1 hypothetical protein -
  OS083_RS08115 - 1520983..1521165 (-) 183 WP_000705248.1 hypothetical protein -
  OS083_RS08120 - 1521369..1521710 (-) 342 WP_000591749.1 hypothetical protein -
  OS083_RS08125 - 1521716..1522648 (-) 933 WP_000759682.1 exonuclease domain-containing protein -
  OS083_RS08130 irvR 1522664..1523377 (-) 714 WP_001031454.1 XRE family transcriptional regulator Regulator
  OS083_RS08135 - 1523340..1523513 (+) 174 WP_001801500.1 hypothetical protein -
  OS083_RS08140 - 1523510..1523773 (+) 264 WP_000854072.1 helix-turn-helix transcriptional regulator -
  OS083_RS08145 - 1523789..1524004 (+) 216 WP_001025404.1 Thoeris anti-defense Tad2 family protein -
  OS083_RS08150 - 1523993..1524322 (-) 330 WP_000128907.1 hypothetical protein -
  OS083_RS08155 - 1524373..1525125 (+) 753 WP_001148606.1 phage antirepressor KilAC domain-containing protein -
  OS083_RS08160 - 1525142..1525336 (+) 195 WP_000388066.1 hypothetical protein -
  OS083_RS08165 - 1525367..1525466 (+) 100 Protein_1485 hypothetical protein -
  OS083_RS08170 - 1525615..1525935 (+) 321 WP_001120935.1 DUF771 domain-containing protein -
  OS083_RS08175 - 1525932..1526093 (+) 162 WP_000066025.1 DUF1270 domain-containing protein -
  OS083_RS08180 - 1526186..1526488 (+) 303 WP_071665634.1 DUF2482 family protein -
  OS083_RS08185 - 1526493..1526753 (+) 261 WP_000291510.1 DUF1108 family protein -
  OS083_RS08190 - 1526762..1527025 (+) 264 WP_071665633.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27017.58 Da        Isoelectric Point: 5.0545

>NTDB_id=687715 OS083_RS08130 WP_001031454.1 1522664..1523377(-) (irvR) [Staphylococcus aureus strain Syndra]
MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSNPSHGVIQRIADVFEVGKSDIDTTYKDDNDITSI
YNKLTPPRQENVLNYANEQLEEQNSKGDNVVDINSYKQEKTPVNVNGCVSAGVGERLHDETLFTEMVKGPIPTHDLALKV
NGDSMEPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKDYDDLHFYRNESVRLIGKVIL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=687715 OS083_RS08130 WP_001031454.1 1522664..1523377(-) (irvR) [Staphylococcus aureus strain Syndra]
ATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACT
TGCTGAACTCATTAACATAAAACCATCTACTTTAAGCGATTATTTAAATTTACGTTCCAACCCCTCTCACGGCGTTATAC
AAAGGATAGCTGATGTTTTCGAGGTTGGTAAAAGCGACATAGATACTACATACAAAGACGATAACGACATCACTTCCATA
TACAACAAACTCACACCTCCCCGCCAAGAAAACGTACTTAACTATGCAAATGAACAATTGGAAGAACAGAATTCTAAAGG
AGATAACGTTGTAGATATTAATTCATATAAACAGGAGAAAACTCCAGTTAACGTCAATGGTTGCGTCTCTGCTGGTGTAG
GAGAACGTTTACACGATGAAACGCTATTTACTGAAATGGTTAAAGGACCTATCCCCACACACGATTTAGCGTTAAAAGTA
AATGGTGATTCTATGGAACCTATGTTTAAAGATGGCGAAATCATATTTGTGGAGAAAACTCACAATATAAAGAATGGACA
AATTGGTATATTCATCATTGAAGAAGAAGCGTACGTTAAGAAAGTCTTTGTTGAAGATGATAGATTGACTCTAGTTTCAC
TAAATAAAGATTACGACGATCTACACTTTTATAGAAATGAAAGTGTGAGGTTAATTGGAAAAGTTATTTTATAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(127-236)

Helix-turn-helix (HTH_3)

(13-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2XG68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

33.929

100

0.401