Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   OS083_RS07665 Genome accession   NZ_CP113027
Coordinates   1463810..1464550 (+) Length   246 a.a.
NCBI ID   WP_000216874.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Syndra     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1458810..1469550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS083_RS07640 yhaM 1459228..1460169 (+) 942 WP_021758271.1 3'-5' exoribonuclease YhaM -
  OS083_RS07645 - 1460290..1461252 (-) 963 WP_000782119.1 foldase protein PrsA -
  OS083_RS07650 - 1461457..1462014 (-) 558 WP_000477959.1 DUF3267 domain-containing protein -
  OS083_RS07655 - 1462747..1463112 (-) 366 WP_000648118.1 YtxH domain-containing protein -
  OS083_RS07660 - 1463254..1463676 (-) 423 WP_000004981.1 HIT family protein -
  OS083_RS07665 pptA 1463810..1464550 (+) 741 WP_000216874.1 ABC transporter ATP-binding protein EcsA Regulator
  OS083_RS07670 ecsB 1464543..1465766 (+) 1224 WP_001245766.1 ABC transporter permease EcsB -
  OS083_RS07675 traP 1465890..1466393 (-) 504 WP_000737983.1 signal transduction protein TRAP -
  OS083_RS07680 - 1466579..1466665 (+) 87 WP_031875110.1 hypothetical protein -
  OS083_RS07685 hemE 1466655..1467692 (+) 1038 WP_000233540.1 uroporphyrinogen decarboxylase -
  OS083_RS07690 hemH 1467750..1468673 (+) 924 WP_000162888.1 ferrochelatase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27687.02 Da        Isoelectric Point: 4.6672

>NTDB_id=687713 OS083_RS07665 WP_000216874.1 1463810..1464550(+) (pptA) [Staphylococcus aureus strain Syndra]
MTVKVEQLTGGYGKRPVIKDINFELNKGEIVGLIGLNGAGKSTTIKHMLGLLTPMEGSLSISDININDDIEAYRRKLSYI
PESPVIYEELTLEEHIEMTAMAYDIDRDEAMNRAMPLLKTFRLENELKVFPSHFSKGMKQKVMIICAFIVNPELYIIDEP
FLGLDPLGIQSMLDLMVEKKNEGRTVLMSTHILATAERYCDRFIILDEGEVVAFGDLEALRQQTGLHNQTLDDIYIHVTQ
GGDVHA

Nucleotide


Download         Length: 741 bp        

>NTDB_id=687713 OS083_RS07665 WP_000216874.1 1463810..1464550(+) (pptA) [Staphylococcus aureus strain Syndra]
ATGACAGTTAAAGTAGAACAGCTTACAGGTGGATATGGAAAACGCCCTGTAATTAAAGATATAAATTTTGAATTAAACAA
AGGCGAAATCGTTGGACTTATTGGCCTTAATGGCGCTGGTAAGAGTACAACGATTAAACATATGCTAGGATTGCTTACAC
CTATGGAAGGATCTCTATCAATTTCAGATATCAACATTAATGATGACATAGAGGCTTATAGAAGAAAGTTATCTTATATT
CCGGAATCACCGGTTATTTATGAAGAACTCACATTAGAGGAACACATTGAGATGACAGCAATGGCATATGATATTGATCG
TGATGAAGCGATGAATCGAGCAATGCCATTATTAAAGACATTCCGTTTAGAAAATGAATTGAAAGTTTTTCCGAGTCATT
TTTCTAAGGGGATGAAACAAAAAGTCATGATTATTTGTGCGTTTATCGTTAATCCCGAATTGTATATTATAGACGAACCA
TTCCTTGGCCTAGATCCATTAGGAATTCAATCCATGTTAGATTTAATGGTTGAAAAGAAAAACGAAGGTAGAACCGTTCT
AATGAGTACACATATTTTAGCAACAGCTGAACGTTATTGTGATCGTTTTATCATACTAGACGAAGGTGAAGTCGTTGCAT
TTGGAGATTTAGAAGCATTGAGACAACAAACCGGCTTACATAATCAAACATTAGACGATATATATATTCATGTGACGCAA
GGTGGAGATGTACATGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

97.154

0.557
  pptA Streptococcus thermophilus LMD-9

56.067

97.154

0.545