Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   M4R69_RS08735 Genome accession   NZ_CP097198
Coordinates   1798807..1799436 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1793807..1804436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4R69_RS08720 (M4R69_08715) helD 1794049..1796103 (-) 2055 WP_000420533.1 DNA helicase IV -
  M4R69_RS08725 (M4R69_08720) yccF 1796226..1796672 (+) 447 WP_001261231.1 YccF domain-containing protein -
  M4R69_RS08730 (M4R69_08725) yccS 1796682..1798844 (+) 2163 WP_000875044.1 YccS family putative transporter -
  M4R69_RS08735 (M4R69_08730) sxy/tfoX 1798807..1799436 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  M4R69_RS08740 (M4R69_08735) sulA 1799655..1800164 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  M4R69_RS08745 (M4R69_08740) ompA 1800521..1801573 (+) 1053 WP_000750419.1 porin OmpA -
  M4R69_RS08750 (M4R69_08745) matP 1801648..1802100 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  M4R69_RS08755 (M4R69_08750) ycbZ 1802286..1804046 (+) 1761 WP_000156520.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=687711 M4R69_RS08735 WP_000839153.1 1798807..1799436(-) (sxy/tfoX) [Escherichia coli strain 2-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=687711 M4R69_RS08735 WP_000839153.1 1798807..1799436(-) (sxy/tfoX) [Escherichia coli strain 2-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1