Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   M4R35_RS14350 Genome accession   NZ_CP097181
Coordinates   2928747..2929376 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain SH21PTE31     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2923747..2934376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4R35_RS14335 helD 2923989..2926043 (-) 2055 WP_001295354.1 DNA helicase IV -
  M4R35_RS14340 yccF 2926166..2926612 (+) 447 WP_001261235.1 YccF domain-containing protein -
  M4R35_RS14345 yccS 2926622..2928784 (+) 2163 WP_000875061.1 YccS family putative transporter -
  M4R35_RS14350 sxy/tfoX 2928747..2929376 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  M4R35_RS14355 sulA 2929595..2930104 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  M4R35_RS14360 ompA 2930461..2931501 (+) 1041 WP_000750416.1 porin OmpA -
  M4R35_RS14365 matP 2931577..2932029 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  M4R35_RS14370 ycbZ 2932215..2933975 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=687668 M4R35_RS14350 WP_000839153.1 2928747..2929376(-) (sxy/tfoX) [Escherichia coli strain SH21PTE31]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=687668 M4R35_RS14350 WP_000839153.1 2928747..2929376(-) (sxy/tfoX) [Escherichia coli strain SH21PTE31]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1