Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   MX657_RS19805 Genome accession   NZ_CP097173
Coordinates   4113259..4114692 (+) Length   477 a.a.
NCBI ID   WP_346806522.1    Uniprot ID   -
Organism   Enterobacter chuandaensis strain E20191216     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4108259..4119692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MX657_RS19775 (MX657_19770) - 4108826..4109803 (+) 978 WP_080328325.1 calcium/sodium antiporter -
  MX657_RS19780 (MX657_19775) kdsD 4109817..4110803 (+) 987 WP_028014567.1 arabinose-5-phosphate isomerase KdsD -
  MX657_RS19785 (MX657_19780) kdsC 4110818..4111384 (+) 567 WP_080328326.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  MX657_RS19790 (MX657_19785) lptC 4111381..4111956 (+) 576 WP_080328327.1 LPS export ABC transporter periplasmic protein LptC -
  MX657_RS19795 (MX657_19790) lptA 4111925..4112479 (+) 555 WP_119916485.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  MX657_RS19800 (MX657_19795) lptB 4112486..4113211 (+) 726 WP_080328329.1 LPS export ABC transporter ATP-binding protein -
  MX657_RS19805 (MX657_19800) rpoN/rpoN1 4113259..4114692 (+) 1434 WP_346806522.1 RNA polymerase factor sigma-54 Machinery gene
  MX657_RS19810 (MX657_19805) hpf 4114715..4115002 (+) 288 WP_014171818.1 ribosome hibernation promoting factor -
  MX657_RS19815 (MX657_19810) ptsN 4115085..4115576 (+) 492 WP_008501443.1 PTS IIA-like nitrogen regulatory protein PtsN -
  MX657_RS19820 (MX657_19815) rapZ 4115622..4116476 (+) 855 WP_008501442.1 RNase adapter RapZ -
  MX657_RS19825 (MX657_19820) npr 4116473..4116745 (+) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  MX657_RS19830 (MX657_19825) mtgA 4116784..4117509 (-) 726 WP_346806526.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  MX657_RS19835 (MX657_19830) elbB 4117506..4118159 (-) 654 WP_346808580.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54186.95 Da        Isoelectric Point: 4.3197

>NTDB_id=687619 MX657_RS19805 WP_346806522.1 4113259..4114692(+) (rpoN/rpoN1) [Enterobacter chuandaensis strain E20191216]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQADLHDEVDTQQSQDTEALDTADALEQKEMPD
ELPLDASWDEIYTAGTPSGTHADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDD
ILESMGDEEIELEEIEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFSKETPWLEEARLIISDHLDLLANHDFRSLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNDRWIVELNSDSIPRLQINQQYASMCTSVRNDSDNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTILSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=687619 MX657_RS19805 WP_346806522.1 4113259..4114692(+) (rpoN/rpoN1) [Enterobacter chuandaensis strain E20191216]
ATGAAGCAAGGTTTGCAATTAAGGCTCAGCCAACAACTGGCGATGACGCCGCAGCTACAGCAGGCCATTCGTCTGCTGCA
ACTGTCCACCTTAGAACTCCAGCAGGAGCTCCAGCAGGCGCTGGACAGCAATCCCCTGCTGGAGCAAGCCGATCTTCATG
ATGAGGTAGATACTCAGCAGTCACAGGATACAGAAGCGCTCGACACCGCAGATGCTCTCGAACAAAAAGAGATGCCGGAC
GAGCTACCGCTGGATGCCAGCTGGGATGAAATCTATACCGCTGGCACCCCTTCCGGTACGCATGCAGACTACCAGGACGA
TGAGCTACCGGTCTATCAGGGCGAAACCACCCAGTCGCTGCAGGATTACCTGATGTGGCAGGTAGAGCTTACCCCCTTCT
CCGATACCGACCGCGCGATCGCCACGTCGATTGTCGACGCCGTTGACGACACCGGCTACTTGACCGTCACGCTGGACGAC
ATTCTGGAAAGCATGGGCGACGAAGAGATTGAGCTTGAAGAGATTGAAGCCGTTCTTAAGCGTATCCAGCGTTTTGATCC
AGTCGGCGTGGCCGCGAAAGATCTGCGCGACTGCCTGCTGATCCAGCTTTCTCAGTTCAGCAAAGAGACGCCATGGCTTG
AGGAGGCGCGCTTAATCATCAGCGATCATCTGGATCTTCTCGCCAACCACGATTTCCGCTCTTTGATGCGCGTTACGCGC
CTGAAAGAAGAGGTGCTGAAAGAGGCGGTGAATCTGATCCAGTCACTCGATCCGCGCCCCGGTCAGTCGATCCAGACCAG
CGAACCCGAGTACGTGATCCCGGACGTGCTGGTCAGAAAACACAATGACCGCTGGATCGTTGAACTGAACTCTGACAGCA
TCCCTCGCCTGCAAATCAACCAGCAGTATGCCTCCATGTGCACCAGCGTGCGCAACGATTCCGACAATCAATATATTCGT
AGCAATCTTCAGGAAGCGCGATGGTTGATCAAGAGTCTGGAGAGCCGAAATGATACCCTGCTCCGCGTGAGCCGCTGCAT
CGTCGAACAGCAGCAGGCGTTCTTTGAGCAGGGTGAAGAGTATATGAAACCGATGGTGCTGGCGGATATCGCCCAGGCCG
TCGAAATGCATGAATCCACGATTTCCCGCGTCACGACGCAGAAGTATCTGCACAGTCCGCGCGGTATTTTTGAGCTTAAG
TATTTCTTCTCCAGCCACGTGAATACCGAGGGTGGCGGCGAAGCCTCCTCAACGGCGATTCGTGCCCTGGTGAAGAAGTT
AATCGCCGCGGAGAACCCCGCGAAGCCACTAAGTGACAGTAAGTTAACCACCATACTGTCCGATCAGGGTATTATGGTGG
CACGTCGTACTGTTGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCTAACCAGCGTAAACAACTGGTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.347

100

0.48