Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   M3M92_RS01845 Genome accession   NZ_CP097165
Coordinates   424481..426298 (+) Length   605 a.a.
NCBI ID   WP_069468616.1    Uniprot ID   A0A1D7TPF4
Organism   Ligilactobacillus salivarius strain VHProbi A17     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 419481..431298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3M92_RS01830 (M3M92_01830) - 420906..422552 (+) 1647 WP_069468619.1 phosphoenolpyruvate carboxykinase (ATP) -
  M3M92_RS01835 (M3M92_01835) - 422656..423435 (+) 780 WP_069468618.1 adaptor protein MecA -
  M3M92_RS01840 (M3M92_01840) - 423484..424383 (+) 900 WP_069468617.1 competence protein CoiA family protein -
  M3M92_RS01845 (M3M92_01845) pepF 424481..426298 (+) 1818 WP_069468616.1 oligoendopeptidase F Regulator
  M3M92_RS01850 (M3M92_01850) - 426388..426984 (-) 597 WP_225359960.1 ClpXP adapter SpxH family protein -
  M3M92_RS01855 (M3M92_01855) - 427161..428015 (+) 855 WP_003705786.1 phosphate ABC transporter substrate-binding protein -
  M3M92_RS01860 (M3M92_01860) pstC 428026..428943 (+) 918 WP_034983079.1 phosphate ABC transporter permease subunit PstC -
  M3M92_RS01865 (M3M92_01865) pstA 428943..429833 (+) 891 WP_003708300.1 phosphate ABC transporter permease PstA -
  M3M92_RS01870 (M3M92_01870) pstB 429838..430632 (+) 795 WP_003702915.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 70606.79 Da        Isoelectric Point: 5.5430

>NTDB_id=687562 M3M92_RS01845 WP_069468616.1 424481..426298(+) (pepF) [Ligilactobacillus salivarius strain VHProbi A17]
MSEKKAKRLLQRNEVPEELTWDLTKVFKSDEEFEKEYQAVKDEVQNFRKLQGTMNQGSQRFLQIIENFLSINRKFEKVYV
YASMKNDQDTTNAKYQGYNEMVDALTAEFSESISWFEPELLELDEDKLKQYFVEKKELKQYEHLIESMLVMRKHTLDKKS
ESLLAGASDIFGTSQNVFGILNNADLKFPIVKDDNGDDIQLSHSVYGKLIESTNREVRKAAFRGLYSIYDQFKHTMATTL
IGNVKVHNFKARVRNYKDAREAATTSNHIPTEVYDVLLEQVHKNLPLLHRYVKLRKKILGVDELHMYDMYTPLTEDSKLT
YNYIQAQIEAKKALEVLGMDYLMHVSEAFENRWIDVVENKGKRSGAYSSGVYDTPPYILLNWQDNLENLFTLVHEMGHSM
HSYYTSHNQPYQYGDYPIFLAEIASTTNENILTDYLLKNNNEKDILIYILNHYLDGFKGTVYRQTQFAEFEKWIHEQNSK
GVPLTAKSISEYYLELNKKYYGSDVISDPEIALEWARIPHFYYNFYVYQYATGFAAATTLAENILSGDESKLNKYLTYLK
AGSSKYPLEVMKDAGVDMTDSSYLEKAFKVFEERLNQLETLLSEK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=687562 M3M92_RS01845 WP_069468616.1 424481..426298(+) (pepF) [Ligilactobacillus salivarius strain VHProbi A17]
ATGTCTGAAAAGAAAGCAAAAAGATTACTTCAGAGAAATGAAGTTCCAGAAGAATTGACGTGGGATTTAACAAAAGTATT
TAAAAGTGATGAAGAGTTTGAAAAGGAGTACCAAGCTGTAAAAGATGAAGTACAGAACTTCAGAAAATTACAAGGTACAA
TGAATCAAGGTAGTCAAAGATTTTTACAAATCATTGAAAATTTCTTAAGTATTAATAGGAAATTTGAAAAAGTTTATGTA
TATGCAAGTATGAAAAATGATCAAGATACTACAAACGCTAAGTATCAAGGATATAATGAAATGGTTGATGCATTAACTGC
TGAATTTTCAGAATCTATATCCTGGTTCGAACCTGAGTTACTAGAATTAGATGAAGATAAATTAAAGCAATATTTTGTAG
AAAAAAAAGAATTAAAACAGTATGAACATTTAATTGAGAGTATGTTGGTCATGAGAAAACATACGCTTGATAAAAAAAGT
GAGTCTTTATTAGCTGGAGCTAGTGATATCTTTGGGACATCGCAAAATGTTTTTGGCATTTTAAACAACGCAGATCTAAA
GTTTCCAATAGTAAAAGATGATAATGGTGATGATATTCAATTATCGCATAGTGTTTATGGAAAATTAATAGAATCTACAA
ATAGGGAAGTTAGAAAAGCTGCATTCAGGGGATTATACAGTATTTATGACCAATTTAAGCATACAATGGCGACAACATTA
ATTGGAAATGTTAAGGTGCATAACTTTAAAGCAAGAGTTCGTAATTATAAAGATGCTAGAGAAGCTGCCACAACATCTAA
TCATATTCCAACAGAAGTCTATGATGTTTTACTGGAACAAGTACACAAAAATCTTCCTTTACTACATCGCTATGTAAAAC
TTAGAAAGAAGATATTAGGTGTCGATGAACTTCATATGTATGATATGTATACACCGTTAACTGAAGATAGTAAGCTTACT
TACAATTACATTCAAGCACAAATTGAAGCTAAAAAAGCACTTGAAGTATTGGGAATGGATTATTTAATGCACGTTAGTGA
AGCATTTGAAAATCGTTGGATAGATGTAGTTGAAAATAAAGGAAAGAGAAGTGGAGCATATTCATCAGGAGTTTATGATA
CTCCGCCATATATCTTATTAAATTGGCAAGATAATTTAGAAAATCTTTTTACCTTGGTACATGAGATGGGACATAGTATG
CATAGTTATTACACTAGTCATAATCAACCCTATCAGTATGGAGATTACCCAATATTTTTGGCAGAAATAGCTTCAACTAC
TAATGAAAATATTTTGACGGATTATCTATTAAAGAATAACAATGAAAAAGATATATTAATCTATATTTTAAATCATTATT
TAGATGGATTTAAAGGTACGGTATATCGTCAAACACAATTTGCAGAATTTGAAAAATGGATTCATGAACAGAATTCGAAA
GGAGTACCACTAACTGCTAAATCAATTTCTGAATATTACTTAGAATTAAATAAGAAATATTATGGTAGTGATGTGATAAG
TGATCCTGAAATAGCTTTAGAATGGGCTAGAATTCCGCATTTCTATTATAATTTCTATGTTTATCAATATGCGACAGGAT
TTGCGGCAGCAACTACTTTAGCTGAAAATATTTTATCTGGCGATGAAAGTAAATTAAACAAATATTTAACTTACTTAAAA
GCTGGTAGTAGTAAATATCCATTGGAAGTCATGAAAGATGCAGGTGTGGATATGACAGATTCTTCATATTTGGAGAAAGC
ATTTAAAGTTTTTGAAGAAAGATTAAATCAATTAGAGACATTATTGTCAGAAAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(209-589)

Oligopeptidase F (Peptidase_M3_N)

(119-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D7TPF4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.209

97.851

0.521