Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   OS077_RS08510 Genome accession   NZ_CP113016
Coordinates   1693427..1694398 (+) Length   323 a.a.
NCBI ID   WP_031775063.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Azir     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1688427..1699398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS077_RS08490 nrdI 1689164..1689562 (+) 399 WP_000692521.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  OS077_RS08495 nrdE 1689525..1691630 (+) 2106 WP_267836630.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  OS077_RS08500 nrdF 1691748..1692719 (+) 972 WP_000562498.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  OS077_RS08505 - 1693233..1693388 (+) 156 Protein_1659 hypothetical protein -
  OS077_RS08510 ceuB 1693427..1694398 (+) 972 WP_031775063.1 ABC transporter permease Machinery gene
  OS077_RS08515 - 1694385..1695341 (+) 957 WP_001245577.1 iron chelate uptake ABC transporter family permease subunit -
  OS077_RS08520 - 1695338..1696099 (+) 762 WP_000616842.1 ABC transporter ATP-binding protein -
  OS077_RS08525 - 1696218..1697246 (+) 1029 WP_000754443.1 ferrated catecholamine ABC transporter substrate-binding lipoprotein SstD -
  OS077_RS08530 - 1697563..1697877 (-) 315 WP_001127269.1 CHY zinc finger protein -
  OS077_RS08535 murB 1697895..1698818 (-) 924 WP_000608440.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35610.18 Da        Isoelectric Point: 10.1194

>NTDB_id=687538 OS077_RS08510 WP_031775063.1 1693427..1694398(+) (ceuB) [Staphylococcus aureus strain Azir]
MKYLLKGNILLLLLILLTIISLFIGVSELSIKDLLHLTESQRNILFSSRIPRTMSILIAGSSLALVGLIMQQMMQNKFVS
PTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSICGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVV
TVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNY
AQQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=687538 OS077_RS08510 WP_031775063.1 1693427..1694398(+) (ceuB) [Staphylococcus aureus strain Azir]
ATGAAGTATTTATTAAAGGGAAATATTTTGCTTCTATTACTAATATTGTTGACAATTATTTCGTTGTTCATAGGTGTGAG
TGAACTATCAATTAAAGATTTACTACATTTAACTGAGTCACAGCGGAATATTTTATTCTCAAGCCGAATACCAAGGACGA
TGAGTATTTTAATTGCTGGAAGTTCGTTGGCTTTAGTAGGCTTGATAATGCAACAAATGATGCAAAATAAGTTTGTTAGT
CCGACTACAGCTGGAACGATGGAATGGGCTAAACTAGGTATTTTAATTGCTTTATTGTTCTTTCCAACCGGTCATATTTT
ATTAAAACTAGTATTTGCTGTTATTTGCAGTATTTGCGGTACGTTTTTATTTGTTAAAATCATTGATTTTATAAAAGTGA
AAGATGTCATTTTTGTACCGCTTTTAGGAATTATGATGGGTGGGATTGTTGCAAGTTTCACAACCTTCATCTCATTGCGC
ACGAATGCTGTTCAAAGCATTGGTAACTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGCTATGAAATTTTATA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTGCTAATCATTTCACGATTGTAGGAATGGGTAAAGACTTTACTA
ATAATTTAGGTTTGAGTTACGAAAAATTAATTAACATCGCATTGTTTATTACTGCAACTATTACAGCATTGGTAGTGGTG
ACTGTTGGAACATTACCGTTCTTAGGACTAGTAATACCAAATATTATTTCAATTTATCGAGGTGATCATTTGAAAAATGC
TATCCCTCATACGATGATGTTAGGTGCCATCTTTGTATTATTTTCTGATATAGTTGGCAGAATTGTTGTTTATCCATATG
AAATAAATATTGGTTTAACAATAGGTGTATTTGGAACAATCATTTTCCTTATCTTGCTTATGAAAGGTAGGAAAAATTAT
GCGCAACAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.5

99.071

0.471