Detailed information NTG0687493

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: M1R55_RS13515
• Genome accession: NZ_CP097149
• Coordinates: 2703974..2705194 (+)
• Length: 406 a.a.
• NCBI ID: WP_249392262.1
• Uniprot ID: -
• Organism: Deinococcus sp. QL22
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2698974..2710194

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M1R55_RS13495 (M1R55_13485)	-	2700574..2701449 (+)	876	WP_249392258.1	prephenate dehydratase	-
M1R55_RS13500 (M1R55_13490)	-	2701621..2702382 (-)	762	WP_249392259.1	DUF4388 domain-containing protein	-
M1R55_RS13505 (M1R55_13495)	scpB	2702602..2703150 (-)	549	WP_249392260.1	SMC-Scp complex subunit ScpB	-
M1R55_RS13510 (M1R55_13500)	-	2703147..2703824 (-)	678	WP_249392261.1	L-threonylcarbamoyladenylate synthase	-
M1R55_RS13515 (M1R55_13505)	pilC	2703974..2705194 (+)	1221	WP_249392262.1	type II secretion system F family protein	Machinery gene
M1R55_RS13520 (M1R55_13510)	-	2705637..2706068 (+)	432	WP_249392263.1	response regulator	-
M1R55_RS13525 (M1R55_13515)	-	2706079..2706753 (-)	675	WP_249392264.1	ImmA/IrrE family metallo-endopeptidase	-
M1R55_RS13530 (M1R55_13520)	-	2706770..2707336 (-)	567	WP_249392265.1	hypothetical protein	-
M1R55_RS13535 (M1R55_13525)	-	2707635..2707973 (+)	339	WP_249392266.1	hypothetical protein	-
M1R55_RS13540 (M1R55_13530)	-	2707970..2708386 (-)	417	WP_249392267.1	Hsp20/alpha crystallin family protein	-
M1R55_RS13545 (M1R55_13535)	miaA	2708417..2709376 (+)	960	WP_249392268.1	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 44300.22 Da
• Isoelectric Point: 9.5423

>NTDB_id=687493 M1R55_RS13515 WP_249392262.1 2703974..2705194(+) (pilC) [Deinococcus sp. QL22]
MPVFEYRVRDQSGKVLKSQMEAETLNQVRDTLRSKNLMIVEIKAPKSGINADIKIPGLTDRPPGLKQVAIFSKQLATLIN
AGVPLVQSLAILQRQIESKNFQAILKILRNDVESGTPLSEAMAKHPKIFNRLYINLVRAGETSGTLDSVLERIASFQEKE
LALRGKLKSALTYPVVVLVFALGITYFLLTTIVPQFAGILAQLDAPLPLITQLLMAVSDFLRNSGLLVFVFIAAFAFAYR
WYYKTPKGRMVIDDIKLRLPVFGPLIKKSAISSFARTFGLLIGSGVNIIESLEITKGTANNAVVEETIENAKNVVMVGEQ
MSSSLATSKVFPPMVVSMVSIGEETGALDTMLGKVGDFYDREVDEAVDSLTAAIEPLMIVFLGGIVGTIVAGMFLPMFAI
IGQLTQ

Nucleotide

• Length: 1221 bp

>NTDB_id=687493 M1R55_RS13515 WP_249392262.1 2703974..2705194(+) (pilC) [Deinococcus sp. QL22]
ATGCCGGTCTTCGAATATCGCGTCCGGGACCAGAGTGGCAAGGTCCTAAAGTCCCAGATGGAAGCCGAAACCCTCAATCA
GGTGCGCGATACGCTGCGCTCTAAAAACCTGATGATTGTGGAGATCAAAGCTCCCAAAAGCGGCATCAACGCCGACATCA
AGATCCCCGGACTCACTGACCGTCCACCCGGACTGAAGCAAGTGGCGATTTTTAGCAAACAATTGGCGACACTTATCAAT
GCAGGCGTGCCCCTGGTGCAGTCGCTTGCTATTTTGCAGCGTCAAATTGAAAGTAAGAATTTTCAAGCCATTCTCAAAAT
TTTGCGCAATGACGTAGAAAGCGGTACGCCTCTGAGCGAAGCGATGGCCAAGCACCCCAAAATTTTTAACCGACTGTATA
TCAACCTTGTGCGTGCGGGTGAGACGAGCGGCACGCTGGACAGCGTTTTGGAACGAATTGCCAGCTTTCAGGAAAAAGAG
TTGGCCCTGCGAGGGAAGCTCAAGAGCGCTTTGACTTACCCAGTCGTGGTGTTGGTCTTCGCTCTGGGAATTACCTACTT
CCTGCTGACGACCATCGTGCCGCAGTTTGCGGGAATCCTGGCACAATTGGACGCCCCCCTTCCCCTAATCACTCAACTCT
TGATGGCAGTTTCTGATTTTCTCCGCAATAGTGGCTTGCTCGTTTTTGTCTTCATCGCAGCCTTCGCATTTGCATACCGC
TGGTATTACAAGACTCCGAAAGGTCGCATGGTCATCGATGACATCAAGCTGCGTCTTCCTGTGTTTGGCCCGCTGATCAA
GAAGAGTGCGATCAGTTCTTTTGCTCGTACATTTGGTTTGCTTATTGGGAGCGGAGTTAATATTATTGAGAGTCTTGAAA
TTACCAAGGGAACAGCCAACAATGCTGTCGTTGAAGAAACGATTGAAAATGCCAAGAATGTGGTGATGGTGGGCGAGCAG
ATGAGTTCAAGTTTGGCAACCAGTAAAGTCTTCCCCCCTATGGTCGTTAGCATGGTATCTATTGGAGAAGAGACAGGCGC
TCTTGATACCATGTTGGGTAAGGTAGGCGATTTTTATGATCGCGAAGTGGATGAGGCAGTAGACAGTTTGACAGCCGCTA
TTGAGCCTCTAATGATTGTATTCCTGGGTGGAATTGTAGGTACGATTGTGGCGGGTATGTTCTTGCCGATGTTTGCCATT
ATTGGGCAGCTCACGCAATAG

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (274-396)

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	60.837	100	0.608