Detailed information    

insolico Bioinformatically predicted

Overview

Name   ddrB   Type   Machinery gene
Locus tag   M1R55_RS10495 Genome accession   NZ_CP097149
Coordinates   2090642..2091211 (-) Length   189 a.a.
NCBI ID   WP_249391716.1    Uniprot ID   -
Organism   Deinococcus sp. QL22     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2085642..2096211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1R55_RS10470 (M1R55_10465) - 2086773..2086991 (-) 219 WP_249391712.1 hypothetical protein -
  M1R55_RS10475 (M1R55_10470) rocF 2087185..2088084 (-) 900 WP_249391713.1 arginase -
  M1R55_RS10480 (M1R55_10475) - 2088205..2088750 (-) 546 WP_249391714.1 GNAT family N-acetyltransferase -
  M1R55_RS10485 (M1R55_10480) - 2089030..2089623 (+) 594 WP_249394192.1 metallophosphoesterase -
  M1R55_RS10490 (M1R55_10485) - 2090065..2090538 (+) 474 WP_249391715.1 hypothetical protein -
  M1R55_RS10495 (M1R55_10490) ddrB 2090642..2091211 (-) 570 WP_249391716.1 single-stranded DNA-binding protein Machinery gene
  M1R55_RS10500 (M1R55_10495) paaI 2091308..2091703 (-) 396 WP_249391717.1 hydroxyphenylacetyl-CoA thioesterase PaaI -
  M1R55_RS10505 (M1R55_10500) - 2091916..2092647 (+) 732 WP_249391718.1 EAL domain-containing protein -
  M1R55_RS10510 (M1R55_10505) - 2092769..2094244 (+) 1476 WP_249391719.1 carboxylesterase/lipase family protein -
  M1R55_RS10515 (M1R55_10510) - 2094269..2095453 (+) 1185 WP_249391720.1 polysaccharide deacetylase family protein -
  M1R55_RS10520 (M1R55_10515) - 2095492..2096004 (+) 513 WP_249391721.1 hypothetical protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20805.20 Da        Isoelectric Point: 6.8863

>NTDB_id=687489 M1R55_RS10495 WP_249391716.1 2090642..2091211(-) (ddrB) [Deinococcus sp. QL22]
MLHIEFITDLGARVTVDVDSADKLLDVQRQYGRLGWTSGELPSGGYQFPFDNESDFDWTLLGARKYTTPEGEEMVYHKGH
GYRRRELEPVDSRKMKLPAAVKYSRGAKNSDPDHVREKADGEFEYVTLAIFRGGRRQDRYAVPGGATSGAPRTAAAPAQA
APQRPRPTAAAAPRANAPAVAVVEEETPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=687489 M1R55_RS10495 WP_249391716.1 2090642..2091211(-) (ddrB) [Deinococcus sp. QL22]
ATGTTGCATATTGAATTCATTACCGATCTGGGTGCGCGGGTCACGGTAGACGTGGACAGCGCCGACAAATTGCTGGATGT
TCAGCGCCAATACGGACGCCTGGGCTGGACGAGCGGCGAGTTGCCGTCGGGCGGCTACCAGTTTCCCTTCGACAATGAGT
CCGACTTTGATTGGACGCTGTTGGGCGCACGCAAATACACCACGCCCGAAGGCGAGGAAATGGTGTACCACAAAGGGCAT
GGCTACCGCCGCCGCGAACTGGAACCCGTAGACAGCCGCAAAATGAAACTGCCCGCCGCCGTGAAGTACAGCCGGGGAGC
CAAAAACAGCGACCCAGACCATGTCCGCGAAAAAGCCGACGGCGAATTTGAATACGTGACACTGGCGATTTTCCGGGGAG
GCCGCCGCCAGGACCGCTACGCCGTTCCCGGAGGCGCAACCAGCGGCGCACCCCGCACAGCCGCAGCACCCGCCCAGGCA
GCGCCGCAGCGTCCCCGGCCAACTGCGGCTGCCGCGCCAAGAGCCAATGCACCAGCAGTCGCCGTAGTTGAGGAAGAAAC
GCCGTTTTGA

Domains

Predicted by InterproScan.

DdrB-like protein (DdrB)

(3-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ddrB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

74.233

86.243

0.64