Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   M2M89_RS13995 Genome accession   NZ_CP097130
Coordinates   2704323..2705069 (-) Length   248 a.a.
NCBI ID   WP_080332541.1    Uniprot ID   -
Organism   Bacillus subtilis strain S16     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2699323..2710069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2M89_RS13970 mreC 2699728..2700600 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  M2M89_RS13975 mreB 2700631..2701644 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  M2M89_RS13980 radC 2701736..2702431 (-) 696 WP_041850180.1 DNA repair protein RadC -
  M2M89_RS13985 maf 2702468..2703037 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  M2M89_RS13990 spoIIB 2703191..2704189 (-) 999 WP_041850181.1 stage II sporulation protein SpoIIB -
  M2M89_RS13995 comC 2704323..2705069 (-) 747 WP_080332541.1 A24 family peptidase Machinery gene
  M2M89_RS14000 folC 2705209..2706501 (-) 1293 WP_041339279.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  M2M89_RS14005 valS 2706561..2709203 (-) 2643 WP_041850183.1 valine--tRNA ligase -
  M2M89_RS14010 - 2709651..2709842 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26437.01 Da        Isoelectric Point: 9.7944

>NTDB_id=687449 M2M89_RS13995 WP_080332541.1 2704323..2705069(-) (comC) [Bacillus subtilis strain S16]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDTWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=687449 M2M89_RS13995 WP_080332541.1 2704323..2705069(-) (comC) [Bacillus subtilis strain S16]
ATGCTATCCATTCTTTTTATCTTCGGGCTGATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATACCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAGAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992