Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   M2M89_RS10950 Genome accession   NZ_CP097130
Coordinates   2180728..2181348 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain S16     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2175728..2186348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2M89_RS10910 ypqE 2176859..2177365 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  M2M89_RS10915 ypqA 2177503..2177922 (+) 420 WP_041849958.1 Hsp20/alpha crystallin family protein -
  M2M89_RS10920 yppG 2177943..2178320 (-) 378 WP_004398696.1 YppG family protein -
  M2M89_RS10925 yppF 2178508..2178696 (+) 189 WP_003230690.1 YppF family protein -
  M2M89_RS10930 yppE 2178735..2179106 (-) 372 WP_021481525.1 YppE family protein -
  M2M89_RS10935 yppD 2179152..2179397 (-) 246 WP_041849959.1 DUF5446 family protein -
  M2M89_RS10940 sspM 2179596..2179700 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  M2M89_RS10945 yppC 2179725..2180687 (-) 963 WP_041849960.1 DUF2515 domain-containing protein -
  M2M89_RS10950 recU 2180728..2181348 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  M2M89_RS10955 ponA 2181370..2184120 (+) 2751 WP_041849961.1 PBP1A family penicillin-binding protein -
  M2M89_RS10960 ypoC 2184195..2184689 (-) 495 WP_041849962.1 YpoC family protein -
  M2M89_RS10965 nth 2184686..2185345 (-) 660 WP_009967580.1 endonuclease III -
  M2M89_RS10970 dnaD 2185364..2186062 (-) 699 WP_124048170.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=687429 M2M89_RS10950 WP_004399067.1 2180728..2181348(+) (recU) [Bacillus subtilis strain S16]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=687429 M2M89_RS10950 WP_004399067.1 2180728..2181348(+) (recU) [Bacillus subtilis strain S16]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1