Detailed information NTG0687428

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: M2M89_RS10145
• Genome accession: NZ_CP097130
• Coordinates: 2049458..2050588 (+)
• Length: 376 a.a.
• NCBI ID: WP_021481447.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain S16
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	2048093..2054628	2049458..2050588	within	0

Gene organization within MGE regions

Location: 2048093..2054628

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M2M89_RS10135	-	2048093..2048467 (+)	375	WP_021481445.1	YoqO family protein	-
M2M89_RS20885	-	2049179..2049325 (+)	147	Protein_1952	phage holin	-
M2M89_RS10145	rapC	2049458..2050588 (+)	1131	WP_021481447.1	tetratricopeptide repeat protein	Regulator
M2M89_RS10150	-	2050578..2050721 (+)	144	WP_153801665.1	hypothetical protein	-
M2M89_RS10155	-	2050875..2051075 (-)	201	WP_021481449.1	hypothetical protein	-
M2M89_RS10160	-	2051297..2051671 (-)	375	Protein_1956	UV damage repair protein UvrX	-
M2M89_RS10165	-	2051669..2051824 (-)	156	Protein_1957	T7SS effector LXG polymorphic toxin	-
M2M89_RS10170	yobM	2051925..2052482 (-)	558	WP_038829958.1	SMI1/KNR4 family protein	-
M2M89_RS10175	yobN	2052610..2054046 (+)	1437	WP_120363441.1	flavin monoamine oxidase family protein	-
M2M89_RS10180	csaA	2054296..2054628 (-)	333	WP_032725963.1	chaperone CsaA	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44393.16 Da
• Isoelectric Point: 5.8915

>NTDB_id=687428 M2M89_RS10145 WP_021481447.1 2049458..2050588(+) (rapC) [Bacillus subtilis strain S16]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKNIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide

• Length: 1131 bp

>NTDB_id=687428 M2M89_RS10145 WP_021481447.1 2049458..2050588(+) (rapC) [Bacillus subtilis strain S16]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCACTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCCCTAAAAGATTCTAAAGCTATAA
ACAAGCACAAACTAATTGGGGCATCATTATATAATTTGGGAAATTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCACTGTACGAAAACGATAAAAGTGATCTTCTCCCTCACACGTTATTTACACTGACACA
AATTTACTTTAAAATGAAGAATATTGAAAAAGCCTTTATACTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAGAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (221-287)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	51.064	100	0.511
rapF	Bacillus subtilis subsp. subtilis str. 168	45.119	100	0.455