Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   M2M89_RS07735 Genome accession   NZ_CP097130
Coordinates   1486768..1487046 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain S16     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1481768..1492046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2M89_RS07715 - 1482956..1483867 (+) 912 WP_041850871.1 ketopantoate reductase family protein -
  M2M89_RS07720 ampS 1483901..1485133 (-) 1233 WP_041850870.1 aminopeptidase -
  M2M89_RS07725 ykpC 1485242..1485376 (-) 135 WP_003238865.1 protein YkpC -
  M2M89_RS07730 mreBH 1485477..1486484 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  M2M89_RS07735 abrB 1486768..1487046 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  M2M89_RS07740 kinC 1487236..1488522 (+) 1287 WP_021479369.1 two-component sensor histidine kinase KinC -
  M2M89_RS07745 ykqA 1488538..1489365 (+) 828 WP_041850869.1 gamma-glutamylcyclotransferase -
  M2M89_RS07750 ktrC 1489428..1490093 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  M2M89_RS07755 ade 1490249..1491982 (+) 1734 WP_041850868.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=687423 M2M89_RS07735 WP_003244728.1 1486768..1487046(+) (abrB) [Bacillus subtilis strain S16]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=687423 M2M89_RS07735 WP_003244728.1 1486768..1487046(+) (abrB) [Bacillus subtilis strain S16]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGGGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576