Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   M2M89_RS06145 Genome accession   NZ_CP097130
Coordinates   1199067..1200218 (+) Length   383 a.a.
NCBI ID   WP_088467623.1    Uniprot ID   -
Organism   Bacillus subtilis strain S16     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 1194067..1205218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2M89_RS06110 yjbB 1194738..1195955 (+) 1218 WP_128441512.1 MFS transporter -
  M2M89_RS06115 yjbC 1196120..1196698 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  M2M89_RS06120 spx 1196879..1197274 (+) 396 WP_014476435.1 transcriptional regulator Spx -
  M2M89_RS06125 yjbE 1197317..1197973 (-) 657 WP_128441514.1 TerC family protein -
  M2M89_RS06130 - 1198143..1198283 (+) 141 WP_119122854.1 hypothetical protein -
  M2M89_RS06135 mecA 1198250..1198906 (+) 657 WP_003232942.1 adaptor protein MecA Regulator
  M2M89_RS06140 - 1198901..1199023 (-) 123 WP_122060507.1 hypothetical protein -
  M2M89_RS06145 coiA 1199067..1200218 (+) 1152 WP_088467623.1 competence protein CoiA Machinery gene
  M2M89_RS06150 pepF 1200448..1202277 (+) 1830 WP_003245178.1 oligoendopeptidase F -
  M2M89_RS06155 - 1202315..1202482 (-) 168 WP_003244944.1 hypothetical protein -
  M2M89_RS06160 spxH 1202797..1203696 (-) 900 WP_003245184.1 protease adaptor protein SpxH -
  M2M89_RS06165 yjbI 1203693..1204091 (-) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  M2M89_RS06170 cwlQ 1204343..1205077 (-) 735 WP_249385602.1 bifunctional muramidase/murein lytic transglycosylase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 44867.87 Da        Isoelectric Point: 9.8768

>NTDB_id=687417 M2M89_RS06145 WP_088467623.1 1199067..1200218(+) (coiA) [Bacillus subtilis strain S16]
MFSAVTEDGQMFHLLGAQQNQKLKQRRFFCPVCGGELAVKLGLQKAPHFAHKQNKSCSIDIEPESAYHLEGKRQLYVWLK
TQRASPILEPYIRTINQRPDVMARIKEHMLAVEYQCANIAPDVFQKRTEGFKQEGIIPQWIMGYSRLKRTASSFYQLSAF
HWQFINASPYRELICYCPERRSFLRLSHIIPFYTNHSYSSVQTIPIHRAGAGDLFFTEPKPSIQYSGWTKAIHRFRHKPH
RFNSKETNRLRQMFYEKRQTSFSFLPTEVFVPVRKGAVFKSPVFVWQGFLYLFMTDLGDKRAPIRFSAVLQQCKLHIHNK
NIALRFECSEECLSEAVKQYIDFLCKKGFLRETQKEVYVLNQPAGGIHSMQDLIERDRSCFIE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=687417 M2M89_RS06145 WP_088467623.1 1199067..1200218(+) (coiA) [Bacillus subtilis strain S16]
TTGTTTAGTGCTGTGACTGAAGACGGCCAAATGTTTCACCTTCTAGGCGCTCAGCAAAACCAGAAATTAAAGCAGAGACG
GTTCTTCTGTCCGGTATGCGGGGGAGAGCTAGCTGTGAAGCTCGGACTTCAAAAAGCGCCGCATTTTGCCCATAAACAGA
ACAAATCCTGCTCCATAGACATCGAACCGGAAAGCGCCTACCACTTAGAAGGAAAAAGACAGCTGTATGTATGGCTGAAA
ACACAACGGGCTTCACCAATATTGGAGCCGTATATAAGGACAATCAACCAAAGACCGGACGTCATGGCAAGAATCAAGGA
GCATATGCTTGCTGTTGAATATCAATGCGCCAATATCGCTCCAGATGTCTTTCAAAAGCGGACAGAGGGCTTCAAACAAG
AAGGAATCATCCCGCAGTGGATTATGGGATACAGCCGCTTAAAACGGACTGCTTCGTCCTTTTATCAGCTTTCAGCTTTT
CATTGGCAGTTTATCAATGCAAGTCCATACAGAGAACTGATATGTTATTGTCCTGAAAGGCGTTCTTTTCTCCGGCTCAG
CCACATCATTCCATTCTACACAAACCATTCTTATTCCTCAGTCCAAACGATCCCTATCCATCGTGCAGGTGCAGGCGATC
TTTTTTTCACTGAACCGAAACCCTCAATTCAATATTCAGGCTGGACGAAAGCGATTCACCGTTTTCGCCATAAACCCCAT
CGGTTTAACTCTAAGGAAACAAATCGCCTTAGGCAGATGTTTTATGAGAAGCGGCAGACATCTTTTTCTTTTCTGCCGAC
TGAAGTGTTTGTTCCTGTTAGAAAAGGGGCAGTTTTTAAGAGTCCGGTTTTTGTGTGGCAGGGGTTTCTTTATTTGTTTA
TGACGGATCTTGGAGATAAACGTGCGCCAATTCGTTTTTCAGCCGTTTTGCAGCAGTGCAAACTGCACATTCATAATAAG
AACATTGCACTCAGGTTCGAATGCAGCGAAGAGTGTCTTTCAGAAGCGGTTAAACAGTATATTGATTTTTTGTGCAAGAA
GGGATTTTTAAGGGAGACTCAGAAAGAAGTATATGTGCTGAATCAGCCTGCAGGCGGCATACACTCCATGCAGGATCTCA
TAGAAAGAGACCGCAGCTGTTTTATAGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

97.587

97.389

0.95