Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   M2M89_RS05560 Genome accession   NZ_CP097130
Coordinates   1085555..1086133 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain S16     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1080555..1091133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2M89_RS05540 hemAT 1081066..1082364 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  M2M89_RS05545 yhfW 1082503..1084032 (-) 1530 WP_041851020.1 FAD-dependent oxidoreductase -
  M2M89_RS05550 yhxC 1084144..1085001 (+) 858 WP_021479616.1 SDR family oxidoreductase -
  M2M89_RS05555 yhzC 1085029..1085262 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  M2M89_RS05560 comK 1085555..1086133 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  M2M89_RS05565 yhxD 1086180..1087079 (-) 900 WP_041851019.1 SDR family oxidoreductase -
  M2M89_RS05570 yhjA 1087296..1087565 (+) 270 WP_038829151.1 excalibur calcium-binding domain-containing protein -
  M2M89_RS05575 yhjB 1087609..1089078 (-) 1470 WP_029317574.1 sodium:solute symporter -
  M2M89_RS05580 yhjC 1089075..1089275 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  M2M89_RS05585 - 1089474..1089845 (-) 372 WP_014476361.1 hypothetical protein -
  M2M89_RS05590 yhjE 1089997..1090620 (+) 624 WP_010886465.1 VTT domain-containing protein -
  M2M89_RS05595 lepB 1090622..1091128 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=687409 M2M89_RS05560 WP_029317573.1 1085555..1086133(+) (comK) [Bacillus subtilis strain S16]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=687409 M2M89_RS05560 WP_029317573.1 1085555..1086133(+) (comK) [Bacillus subtilis strain S16]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGAGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995