Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   M3M36_RS03275 Genome accession   NZ_CP097122
Coordinates   684524..685894 (-) Length   456 a.a.
NCBI ID   WP_252774379.1    Uniprot ID   -
Organism   Fructobacillus americanaquae strain KI3_B9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 679524..690894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3M36_RS03265 (M3M36_03265) cysS 681340..682752 (-) 1413 WP_252774377.1 cysteine--tRNA ligase -
  M3M36_RS03270 (M3M36_03270) gltX 682851..684347 (-) 1497 WP_252774378.1 glutamate--tRNA ligase -
  M3M36_RS03275 (M3M36_03275) radA 684524..685894 (-) 1371 WP_252774379.1 DNA repair protein RadA Machinery gene
  M3M36_RS03280 (M3M36_03280) dut 685894..686364 (-) 471 WP_252774380.1 dUTP diphosphatase -
  M3M36_RS03285 (M3M36_03285) - 686481..686777 (+) 297 WP_252774381.1 GNAT family N-acetyltransferase -
  M3M36_RS03290 (M3M36_03290) - 687162..689324 (-) 2163 WP_252774382.1 AAA family ATPase -
  M3M36_RS03295 (M3M36_03295) - 689386..689667 (-) 282 WP_252774383.1 transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49088.31 Da        Isoelectric Point: 5.4093

>NTDB_id=687365 M3M36_RS03275 WP_252774379.1 684524..685894(-) (radA) [Fructobacillus americanaquae strain KI3_B9]
MAKTKTQFICSNCDFISARYLGRCPNCGEWGTFVEEKVQPETANRKARVGIDGKVAKVQAINEVSLEDTPKVTTGLKELN
RVLGGGVVAGTLVLIGGDPGIGKSTLLLQVSGELSNHGKVLYVTGEESASQVKLRADRLEVGGQQFYLYPETDMTAVKKQ
VEEMKPNFLVIDSVQTMQEPDLTSPIGSVAQIREVTADLLQIAKTNNITVFIVGHVTKDGAIAGPKILEHMVDTVLYFEG
DRHYKYRILRAVKNRFGATNELGIFEMRDQGLAEVANPSEIFLEERLAGATGSAIVATLEGNRPILAELQALVTPSVFGN
AQRTATGLDRNRVSVIMAVLEKRANLLLQNQDAYLKAAGGVKLDEPAIDLAVAVAVASSYQDKETRASDVFIGELGLTGE
IRSVADLEGRLKEATKLGFSRAIVPKNNLAGLRLPDGLEVVGVTTIKEALQLALGD

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=687365 M3M36_RS03275 WP_252774379.1 684524..685894(-) (radA) [Fructobacillus americanaquae strain KI3_B9]
ATGGCCAAAACGAAAACCCAATTTATCTGTTCAAATTGTGACTTTATTTCAGCCCGCTACCTCGGTCGCTGCCCAAACTG
TGGCGAGTGGGGCACTTTTGTGGAAGAAAAGGTCCAACCGGAAACGGCGAACCGCAAGGCTCGCGTCGGCATTGACGGTA
AGGTCGCTAAGGTCCAAGCCATTAACGAAGTCTCTTTGGAGGACACACCGAAGGTCACCACGGGTTTGAAGGAATTGAAC
CGCGTTCTTGGGGGTGGTGTTGTGGCCGGGACCCTGGTGTTAATTGGTGGGGACCCTGGTATTGGGAAATCAACGCTTTT
GCTCCAGGTTTCAGGCGAACTTTCCAACCATGGCAAGGTTCTTTATGTGACCGGAGAAGAGTCAGCCTCACAGGTTAAGC
TACGGGCAGACCGGTTAGAGGTTGGTGGTCAGCAATTTTACCTTTACCCGGAAACCGATATGACGGCGGTGAAAAAACAG
GTCGAGGAAATGAAGCCAAACTTCTTGGTGATTGATTCCGTGCAGACGATGCAGGAACCTGATTTGACCTCGCCAATTGG
ATCTGTTGCTCAGATTAGAGAAGTGACGGCTGACTTGTTGCAGATTGCCAAGACCAATAACATCACGGTCTTCATCGTCG
GCCACGTGACCAAGGATGGTGCCATTGCTGGTCCAAAGATTTTGGAGCATATGGTCGATACGGTTCTTTACTTTGAAGGG
GACCGCCACTATAAGTACCGGATTCTGCGGGCGGTCAAAAACCGTTTTGGGGCCACCAACGAGCTTGGGATTTTTGAAAT
GCGTGACCAGGGTCTGGCTGAAGTTGCTAATCCTTCCGAAATTTTTCTGGAAGAGCGCTTGGCCGGCGCAACTGGGTCGG
CGATTGTGGCAACGTTAGAGGGAAACCGCCCCATTTTAGCGGAGCTTCAAGCCCTCGTGACCCCGTCCGTCTTTGGTAAT
GCACAACGAACGGCCACTGGCCTAGACCGTAACCGCGTTTCGGTCATTATGGCAGTCTTGGAGAAGCGGGCGAACCTTCT
GCTGCAAAACCAAGATGCCTATCTCAAGGCGGCCGGTGGCGTTAAGCTTGATGAGCCGGCTATCGATTTGGCGGTCGCGG
TCGCAGTTGCCTCGTCCTACCAAGATAAGGAAACTAGGGCTAGTGACGTCTTTATTGGTGAGTTGGGCTTGACTGGTGAA
ATCCGGTCCGTGGCCGACTTGGAAGGTCGGCTGAAGGAAGCAACCAAGTTAGGCTTTTCGCGGGCAATTGTACCCAAGAA
TAACTTGGCTGGCTTGCGTTTACCCGATGGCCTTGAGGTGGTTGGCGTGACGACGATTAAAGAGGCATTGCAATTAGCAC
TTGGCGATTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(76-220)

Subunit ChlI of Mg-chelatase (ChlI)

(362-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

65.188

98.904

0.645
  radA Streptococcus pneumoniae D39

65.188

98.904

0.645
  radA Streptococcus pneumoniae R6

65.188

98.904

0.645
  radA Streptococcus pneumoniae TIGR4

65.188

98.904

0.645
  radA Streptococcus mitis NCTC 12261

64.967

98.904

0.643
  radA Streptococcus mitis SK321

64.967

98.904

0.643
  radA Bacillus subtilis subsp. subtilis str. 168

59.956

100

0.601