Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   M3M36_RS02500 Genome accession   NZ_CP097122
Coordinates   543208..545001 (-) Length   597 a.a.
NCBI ID   WP_252774278.1    Uniprot ID   -
Organism   Fructobacillus americanaquae strain KI3_B9     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 538208..550001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3M36_RS02485 (M3M36_02485) pheT 538426..540882 (-) 2457 WP_252774275.1 phenylalanine--tRNA ligase subunit beta -
  M3M36_RS02490 (M3M36_02490) pheS 540885..541934 (-) 1050 WP_252774276.1 phenylalanine--tRNA ligase subunit alpha -
  M3M36_RS02495 (M3M36_02495) - 542256..543188 (-) 933 WP_252774277.1 phosphoglycerate dehydrogenase -
  M3M36_RS02500 (M3M36_02500) pepF 543208..545001 (-) 1794 WP_252774278.1 oligoendopeptidase F Regulator
  M3M36_RS02505 (M3M36_02505) - 545078..546148 (-) 1071 WP_252774279.1 competence protein CoiA -
  M3M36_RS02510 (M3M36_02510) - 546202..547647 (-) 1446 WP_252774280.1 ABC transporter substrate-binding protein/permease -
  M3M36_RS02515 (M3M36_02515) - 547692..548441 (-) 750 WP_252774281.1 amino acid ABC transporter ATP-binding protein -
  M3M36_RS02520 (M3M36_02520) - 548438..549886 (-) 1449 WP_252774282.1 ABC transporter substrate-binding protein/permease -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 66903.51 Da        Isoelectric Point: 4.3418

>NTDB_id=687363 M3M36_RS02500 WP_252774278.1 543208..545001(-) (pepF) [Fructobacillus americanaquae strain KI3_B9]
MGQITRQEVPAKLTWDLTTVFADDQAFEEAFAALRASLADLDQYVGHLGDSAQTLLAGLETDLQIERSFEKIYVYANQKY
DEDTTNNHYAGVYAQTQDLLAAVSQATAFFQPEVLAIDEQTLATYLEDQALVPYRHFFDVLLSEKAHTLPADQEALLAGA
STVLSSAEQTFSALDNADMDFGDVVTENGEVAELTNGLYGVMLRSKNQPTRQQAFTTLYDAYMSLKNTFASTLSSTVKKH
NFLAKTRHYQSAKEAAVLSNQIPTAVYDTLTDRVEKNLPLLHRYVSLRKEVLGLEEVHSYDLYVSLTDDVDLPVTYDAAQ
EIALKALAPLGDDYLAVVKKAFAERWIDVVENKGKRSGAYSGGAYDTNPYILLNWQDTLDNVYTLVHEMGHTVHSYLTRH
NQPYHYGDYPIFLAEIASTTNEALLTDYLLKTYDDPKVQAYVLNQYLDGFKGTVFRQTEFADFEAWIHDQDAAGQPLTAE
AMANYYGDLDSKFYGPDLTKDPEIAYEWSRIPHFYYNFYVYQYATGEAAATTLAQNILEKGEAKRYKDYLKAGNSASPLE
VIAKAGVDMTEGAYLDQAFAVFEDRLNQLEALLGQAK

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=687363 M3M36_RS02500 WP_252774278.1 543208..545001(-) (pepF) [Fructobacillus americanaquae strain KI3_B9]
ATGGGACAAATCACACGACAAGAAGTGCCAGCCAAACTGACTTGGGATTTAACCACAGTCTTTGCAGATGACCAGGCCTT
TGAAGAAGCCTTTGCCGCTTTGAGGGCTAGCTTGGCCGACTTGGACCAGTATGTCGGGCACCTTGGTGATTCTGCCCAGA
CTCTGTTGGCCGGTTTGGAAACAGATCTGCAAATCGAACGGTCATTTGAAAAGATTTACGTTTATGCCAATCAAAAATAT
GATGAAGATACGACAAACAACCACTATGCTGGTGTCTACGCCCAAACCCAAGACCTATTAGCCGCTGTGAGCCAAGCAAC
CGCTTTTTTCCAACCGGAAGTTTTGGCGATTGATGAACAGACTTTGGCCACTTACCTAGAAGATCAGGCTCTGGTGCCTT
ACCGTCATTTCTTCGATGTCTTGCTTTCAGAAAAGGCACACACACTGCCCGCAGATCAAGAGGCCCTGCTAGCCGGTGCC
TCAACTGTTTTGTCATCGGCTGAACAAACTTTCTCGGCGCTGGACAACGCCGATATGGACTTTGGTGATGTCGTCACGGA
AAACGGTGAAGTCGCAGAATTGACGAACGGCCTCTACGGCGTGATGCTGCGTTCTAAGAACCAGCCAACACGGCAGCAGG
CCTTTACGACCCTTTATGACGCTTATATGTCGTTGAAAAATACTTTCGCTTCAACGTTGTCTTCAACGGTTAAGAAACAT
AATTTCTTGGCGAAGACTCGTCACTACCAATCCGCGAAGGAAGCGGCCGTGCTGTCTAATCAGATTCCAACAGCCGTTTA
TGATACTTTGACTGACCGTGTTGAAAAGAACCTGCCACTTTTGCATCGTTACGTTTCATTGCGCAAGGAAGTCTTGGGCT
TGGAAGAAGTTCATTCATACGACCTGTACGTTTCCTTGACAGATGATGTTGACTTGCCTGTTACCTATGATGCTGCACAA
GAAATCGCCTTAAAAGCCTTAGCACCATTGGGTGATGATTATCTGGCAGTAGTCAAGAAGGCCTTTGCGGAGCGCTGGAT
TGACGTTGTTGAAAACAAGGGCAAACGGTCAGGTGCCTATTCTGGTGGCGCATACGATACCAACCCTTATATCTTGCTGA
ACTGGCAGGATACATTGGATAACGTCTATACTTTGGTACACGAAATGGGTCACACCGTTCATTCTTATTTGACTCGGCAC
AACCAGCCTTACCACTATGGTGATTATCCAATCTTTTTGGCCGAAATTGCTTCAACGACTAATGAGGCCCTCTTGACGGA
CTACCTGCTGAAGACTTATGATGACCCTAAGGTTCAAGCCTATGTTTTGAACCAATACTTAGACGGTTTTAAGGGCACGG
TCTTCCGTCAAACGGAATTTGCTGACTTTGAAGCTTGGATTCATGATCAAGATGCTGCTGGCCAGCCACTGACGGCCGAA
GCGATGGCCAATTATTATGGCGACTTGGATTCAAAGTTCTATGGTCCTGATTTGACTAAGGACCCAGAAATTGCTTATGA
ATGGTCACGAATTCCACACTTCTACTACAATTTTTACGTTTATCAGTACGCTACTGGTGAAGCGGCTGCCACAACACTGG
CCCAAAACATTTTGGAAAAGGGTGAGGCAAAACGCTATAAGGACTATTTGAAAGCTGGTAACTCAGCTAGTCCATTAGAA
GTTATTGCCAAGGCTGGCGTTGATATGACAGAAGGCGCATACTTAGATCAAGCCTTTGCCGTCTTTGAAGATCGGTTAAA
TCAGCTTGAGGCATTACTTGGTCAGGCAAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(201-580)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.607

98.995

0.511