Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   M3M37_RS04485 Genome accession   NZ_CP097121
Coordinates   878491..879873 (-) Length   460 a.a.
NCBI ID   WP_252794441.1    Uniprot ID   -
Organism   Fructilactobacillus carniphilus strain KI4_A6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 873491..884873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3M37_RS04460 (M3M37_04460) - 873651..874178 (-) 528 WP_252794432.1 NYN domain-containing protein -
  M3M37_RS04465 (M3M37_04465) rlmB 874207..874968 (-) 762 WP_252794434.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  M3M37_RS04470 (M3M37_04470) - 874958..875383 (-) 426 WP_252794436.1 Mini-ribonuclease 3 -
  M3M37_RS04475 (M3M37_04475) cysS 875392..876801 (-) 1410 WP_252794437.1 cysteine--tRNA ligase -
  M3M37_RS04480 (M3M37_04480) gltX 876913..878406 (-) 1494 WP_252794439.1 glutamate--tRNA ligase -
  M3M37_RS04485 (M3M37_04485) radA 878491..879873 (-) 1383 WP_252794441.1 DNA repair protein RadA Machinery gene
  M3M37_RS04490 (M3M37_04490) - 879889..880425 (-) 537 WP_252794442.1 dUTP diphosphatase -
  M3M37_RS04495 (M3M37_04495) rpiA 880571..881257 (+) 687 WP_252794444.1 ribose-5-phosphate isomerase RpiA -
  M3M37_RS04500 (M3M37_04500) - 881309..882643 (+) 1335 WP_252794445.1 aminopeptidase C -
  M3M37_RS04505 (M3M37_04505) - 882767..883438 (-) 672 WP_252794455.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -
  M3M37_RS04510 (M3M37_04510) - 883610..884761 (+) 1152 WP_252794456.1 LCP family protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49702.81 Da        Isoelectric Point: 5.3744

>NTDB_id=687350 M3M37_RS04485 WP_252794441.1 878491..879873(-) (radA) [Fructilactobacillus carniphilus strain KI4_A6]
MSKTKTQFVCSNCGYISPTYLGRCPNCGEWNTFTEETVTKDSGTNAKSTRVSLTGSRVEPQLINEVDAQDAPRYQIQSAE
LNRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSGQLATLGKRVLYVTGEESADQVKMRADRLQIAVNDRLYVFPETDMTA
VRDAIANLKPDVVIVDSVQTMQEGDVDSAIGSVSQVRGVTTDLMNIAKTNNITVFIVGHVTKGGAIAGPKTLEHMVDTVL
YFEGDKHHSYRLLRAVKNRFGSTNELGIFEMADGGLQEVQNPSEIFLEERLKNATGSAIVVAMEGTRPILVELQALITPS
VFGNAQRTATGVDRNRISLIMAVLEKRAGLMLQNQDAYVKAAGGVKLNEPAIDLAMAVSIASSYENISTNPRECYVGELG
LTGEVRRVDRMEQRIREAAKLGFDRIVVPQHSLEGLDVPDGIEVIGVTTLKEALKLAIPK

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=687350 M3M37_RS04485 WP_252794441.1 878491..879873(-) (radA) [Fructilactobacillus carniphilus strain KI4_A6]
ATGAGTAAAACAAAGACCCAGTTTGTCTGTTCTAACTGTGGTTACATTTCACCGACCTACCTGGGCCGGTGCCCCAATTG
TGGGGAATGGAATACGTTTACCGAAGAAACGGTCACAAAGGATAGTGGAACAAACGCCAAGTCGACTCGAGTGTCTTTGA
CCGGAAGTCGCGTGGAACCGCAACTGATTAACGAGGTTGACGCTCAGGACGCGCCCCGCTACCAGATTCAATCAGCCGAG
TTAAACCGAGTGCTCGGGGGCGGAATTGTGCCCGGATCCTTGGTCTTAATTGGGGGCGATCCCGGGATCGGGAAGTCGAC
CTTACTGCTCCAAGTTTCTGGGCAATTAGCCACGCTCGGAAAACGGGTCCTGTACGTGACCGGAGAAGAAAGTGCAGATC
AGGTTAAGATGCGGGCGGATCGGCTGCAAATTGCGGTGAATGACCGGCTCTACGTTTTTCCAGAAACCGACATGACGGCG
GTACGCGATGCAATTGCGAACCTAAAACCGGACGTCGTGATTGTCGACTCCGTCCAAACGATGCAGGAGGGCGATGTGGA
CTCCGCGATTGGCTCGGTTTCACAGGTCCGGGGCGTGACGACCGACCTGATGAACATTGCGAAGACCAACAACATTACGG
TCTTCATCGTGGGCCACGTGACCAAGGGTGGCGCGATTGCCGGACCGAAAACTCTGGAACACATGGTGGATACGGTGCTG
TACTTTGAAGGGGATAAACACCACTCGTACCGCTTGTTACGGGCGGTTAAGAACCGGTTTGGGTCGACCAACGAACTCGG
TATCTTTGAGATGGCGGACGGGGGCCTGCAAGAGGTGCAAAATCCGTCGGAGATTTTCCTGGAGGAACGGCTGAAGAATG
CGACCGGATCGGCGATTGTGGTGGCGATGGAAGGCACCCGACCGATTCTGGTGGAACTTCAGGCCCTGATTACTCCTTCT
GTCTTTGGCAACGCGCAGCGAACCGCGACCGGAGTGGATCGGAACCGCATCTCGTTGATCATGGCCGTCTTAGAAAAGCG
AGCGGGCTTGATGCTGCAAAATCAAGATGCCTACGTTAAGGCCGCTGGGGGCGTGAAACTGAACGAACCCGCGATTGACC
TCGCAATGGCGGTTAGCATTGCCTCCAGTTACGAAAACATCAGCACCAATCCGCGCGAGTGTTACGTTGGTGAACTCGGA
CTGACCGGAGAAGTCCGGCGGGTCGATCGGATGGAACAACGAATTCGCGAGGCCGCTAAGTTGGGCTTTGACCGCATCGT
GGTTCCCCAACACAGCTTAGAAGGGCTTGACGTGCCCGATGGCATCGAAGTAATCGGGGTCACAACCCTCAAGGAAGCGC
TTAAGTTAGCCATCCCCAAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(365-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

64.835

98.913

0.641
  radA Streptococcus pneumoniae D39

64.835

98.913

0.641
  radA Streptococcus pneumoniae R6

64.835

98.913

0.641
  radA Streptococcus pneumoniae TIGR4

64.835

98.913

0.641
  radA Streptococcus mitis NCTC 12261

64.835

98.913

0.641
  radA Streptococcus mitis SK321

64.835

98.913

0.641
  radA Bacillus subtilis subsp. subtilis str. 168

60.262

99.565

0.6